Named species · GMrepo v3 · NCBI lineage

Microbes

Understood as Bacillota Edit them in the filters below, or rephrase.

983 species

Most studiedMost common in healthy guts

Species	Healthy guts	Samples ↓	Products
Faecalibacterium prausnitzii Bacillota · Oscillospiraceae	90%	20,688	0
Blautia wexlerae Bacillota · Lachnospiraceae	87%	20,683	0
Fusicatenibacter saccharivorans Bacillota · Lachnospiraceae	81%	18,293	0
Blautia faecis Bacillota · Lachnospiraceae	77%	18,046	0
Anaerostipes hadrus Bacillota · Lachnospiraceae	78%	17,950	0
Agathobacter rectalis Bacillota · Lachnospiraceae	79%	17,543	0
Flavonifractor plautii Bacillota · Oscillospiraceae	70%	17,023	0
Agathobaculum butyriciproducens Bacillota · Butyricicoccaceae	77%	16,899	0
Dorea longicatena Bacillota · Lachnospiraceae	73%	16,441	0
Ruthenibacterium lactatiformans Bacillota · Oscillospiraceae	70%	16,277	0
Dysosmobacter welbionis Bacillota · Oscillospiraceae	72%	16,177	0
Mediterraneibacter gnavus Bacillota · Lachnospiraceae	62%	16,041	0
Roseburia inulinivorans Bacillota · Lachnospiraceae	70%	15,651	0
Blautia obeum Bacillota · Lachnospiraceae	67%	15,479	0
Candidatus Cibiobacter qucibialis Bacillota	69%	15,285	0
Blautia massiliensis (ex Durand et al. 2017) Bacillota · Lachnospiraceae	68%	15,176	0
Waltera acetigignens Bacillota · Lachnospiraceae	70%	15,161	0
Oscillibacter valericigenes Bacillota · Oscillospiraceae	70%	14,988	0
Gemmiger formicilis Bacillota · Oscillospiraceae	71%	14,882	0
Dorea formicigenerans Bacillota · Lachnospiraceae	66%	14,865	0
Streptococcus salivarius Bacillota · Streptococcaceae	62%	14,842	34
Roseburia faecis Bacillota · Lachnospiraceae	68%	14,837	0
Clostridium fessum Bacillota · Clostridiaceae	68%	14,718	0
Lachnospira pectinoschiza Bacillota · Lachnospiraceae	67%	14,692	0
[Ruminococcus] torques Bacillota · Lachnospiraceae	58%	14,190	0
Ruminococcus bromii Bacillota · Oscillospiraceae	63%	14,012	0
Mediterraneibacter faecis Bacillota · Lachnospiraceae	64%	13,962	0
Roseburia hominis Bacillota · Lachnospiraceae	64%	13,947	0
Lachnospira eligens Bacillota · Lachnospiraceae	62%	13,907	0
Coprococcus comes Bacillota · Lachnospiraceae	63%	13,826	0
Anaerobutyricum hallii Bacillota · Lachnospiraceae	61%	13,491	2
Lacrimispora amygdalina Bacillota · Lachnospiraceae	61%	13,102	0
Gallintestinimicrobium propionicum Bacillota · Lachnospiraceae	63%	13,016	0
Lawsonibacter asaccharolyticus Bacillota · Oscillospiraceae	58%	12,482	0
Vescimonas coprocola Bacillota · Oscillospiraceae	55%	11,786	0
Enterocloster bolteae Bacillota · Lachnospiraceae	42%	11,709	0
Ruminococcus bicirculans (ex Wegman et al. 2014) Bacillota · Oscillospiraceae	55%	11,696	0
Roseburia intestinalis Bacillota · Lachnospiraceae	53%	11,670	0
Coprococcus catus Bacillota · Lachnospiraceae	51%	11,375	0
Eubacterium ramulus Bacillota · Eubacteriaceae	51%	11,330	0
Blautia glucerasea Bacillota · Lachnospiraceae	49%	11,047	0
Streptococcus parasanguinis Bacillota · Streptococcaceae	44%	11,044	0
Hominenteromicrobium mulieris Bacillota · Oscillospiraceae	51%	10,732	0
Simiaoa sunii Bacillota · Lachnospiraceae	50%	10,706	0
Faecalibacillus intestinalis Bacillota · Coprobacillaceae	49%	10,685	0
Anaerotignum faecicola Bacillota · Anaerotignaceae	47%	10,407	0
[Clostridium] leptum Bacillota · Oscillospiraceae	47%	10,324	0
Phascolarctobacterium faecium Bacillota · Acidaminococcaceae	40%	10,122	0
Eubacterium ventriosum Bacillota · Eubacteriaceae	47%	9,921	0
Oliverpabstia intestinalis Bacillota · Lachnospiraceae	45%	9,915	0
Romboutsia timonensis Bacillota · Peptostreptococcaceae	46%	9,772	0
Anaerobutyricum soehngenii Bacillota · Lachnospiraceae	42%	9,574	0
Faecalicatena fissicatena Bacillota · Lachnospiraceae	46%	9,505	0
Enterocloster hominis (ex Liu et al. 2021) Bacillota · Lachnospiraceae	40%	9,210	0
Fusicatenibacter faecihominis Bacillota · Lachnospiraceae	44%	9,083	0
Hydrogenoanaerobacterium saccharovorans Bacillota · Oscillospiraceae	43%	9,057	0
Evtepia gabavorous Bacillota	39%	8,928	0
[Clostridium] innocuum Bacillota · Clostridiaceae	32%	8,645	0
Intestinibacter bartlettii Bacillota · Peptostreptococcaceae	39%	8,565	0
Streptococcus thermophilus Bacillota · Streptococcaceae	35%	8,076	553
Lentihominibacter faecis Bacillota · Anaerovoracaceae	39%	8,024	0
Hungatella hathewayi Bacillota · Lachnospiraceae	28%	7,945	0
Veillonella parvula Bacillota · Veillonellaceae	29%	7,931	0
Coprococcus eutactus Bacillota · Lachnospiraceae	39%	7,725	0
[Eubacterium] siraeum Bacillota · Oscillospiraceae	37%	7,704	0
[Ruminococcus] lactaris Bacillota · Lachnospiraceae	37%	7,661	0
Dialister invisus Bacillota · Veillonellaceae	33%	7,524	0
Enterocloster citroniae Bacillota · Lachnospiraceae	28%	7,304	0
[Clostridium] symbiosum Bacillota · Lachnospiraceae	24%	7,190	0
Enterocloster aldenensis Bacillota · Lachnospiraceae	25%	7,174	0
Thomasclavelia ramosa Bacillota · Coprobacillaceae	24%	7,172	0
Mediterraneibacter butyricigenes Bacillota · Lachnospiraceae	32%	6,882	0
Faecalibacterium wellingii Bacillota · Oscillospiraceae	36%	6,766	0
Intestinimonas butyriciproducens Bacillota	30%	6,759	0
Holdemania filiformis Bacillota · Erysipelotrichaceae	28%	6,671	0
Faecalibacterium butyricigenerans Bacillota · Oscillospiraceae	35%	6,568	0
Lachnospira hominis (ex Liu et al. 2021) Bacillota · Lachnospiraceae	30%	6,255	0
Anaerotruncus colihominis Bacillota · Oscillospiraceae	25%	6,169	0
Anaeromassilibacillus senegalensis Bacillota · Acutalibacteraceae	28%	6,007	0
Wujia chipingensis Bacillota · Lachnospiraceae	30%	5,919	0
Veillonella dispar Bacillota · Veillonellaceae	22%	5,838	0
Streptococcus australis Bacillota · Streptococcaceae	25%	5,795	0
Wansuia hejianensis Bacillota · Lachnospiraceae	26%	5,731	0
Merdimmobilis hominis Bacillota · Oscillospiraceae	23%	5,661	0
[Clostridium] scindens Bacillota · Lachnospiraceae	20%	5,524	0
Mediterraneibacter glycyrrhizinilyticus Bacillota · Lachnospiraceae	20%	5,451	0
Sellimonas intestinalis Bacillota · Lachnospiraceae	21%	5,299	0
Blautia caecimuris Bacillota · Lachnospiraceae	19%	5,275	0
Faecalicatena contorta Bacillota · Lachnospiraceae	21%	5,231	0
Veillonella atypica Bacillota · Veillonellaceae	18%	5,226	0
Ruminococcus callidus Bacillota · Oscillospiraceae	25%	5,144	0
Blautia luti Bacillota · Lachnospiraceae	22%	4,637	0
Guopingia tenuis Bacillota · Christensenellaceae	23%	4,615	0
Anaerotruncus rubiinfantis Bacillota · Oscillospiraceae	22%	4,603	0
Eisenbergiella tayi Bacillota · Lachnospiraceae	17%	4,508	0
Enterocloster clostridioformis Bacillota · Lachnospiraceae	14%	4,482	0
Streptococcus mitis Bacillota · Streptococcaceae	19%	4,478	0
Pseudoflavonifractor gallinarum Bacillota · Oscillospiraceae	20%	4,336	0
Blautia stercoris Bacillota · Lachnospiraceae	19%	4,284	0
Megamonas funiformis Bacillota · Selenomonadaceae	17%	4,235	0
Pseudoflavonifractor capillosus Bacillota · Oscillospiraceae	20%	4,165	0
Thomasclavelia spiroformis Bacillota · Coprobacillaceae	18%	4,140	0
Turicibacter bilis Bacillota · Turicibacteraceae	20%	4,106	0
Enterocloster asparagiformis Bacillota · Lachnospiraceae	16%	4,100	0
Enterocloster lavalensis Bacillota · Lachnospiraceae	15%	4,086	0
[Clostridium] nexile Bacillota · Lachnospiraceae	14%	4,085	0
Intestinimonas massiliensis (ex Afouda et al. 2020) Bacillota	18%	4,081	0
Blautia producta Bacillota · Lachnospiraceae	14%	3,888	0
Eisenbergiella massiliensis Bacillota · Lachnospiraceae	13%	3,877	0
Veillonella rogosae Bacillota · Veillonellaceae	16%	3,850	0
Holdemanella porci Bacillota · Erysipelotrichaceae	18%	3,784	0
Massilioclostridium coli Bacillota · Clostridiaceae	18%	3,767	0
Allisonella histaminiformans Bacillota · Veillonellaceae	17%	3,692	0
Zhenpiania hominis Bacillota · Anaerovoracaceae	17%	3,615	0
Roseburia lenta Bacillota · Lachnospiraceae	16%	3,534	0
Faecalimonas umbilicata Bacillota · Lachnospiraceae	10%	3,489	0
Negativibacillus massiliensis Bacillota	14%	3,487	0
Blautia hansenii Bacillota · Lachnospiraceae	11%	3,453	0
Bittarella massiliensis (ex Durand et al. 2017) Bacillota · Oscillospiraceae	17%	3,445	0
Clostridium saudiense Bacillota · Clostridiaceae	15%	3,443	0
Anaerosacchariphilus hominis Bacillota · Lachnospiraceae	17%	3,433	0
Hydrogeniiclostridium mannosilyticum Bacillota · Acutalibacteraceae	17%	3,429	0
Neobittarella massiliensis (ex Bilen et al. 2018) Bacillota · Oscillospiraceae	13%	3,290	0
Monoglobus pectinilyticus Bacillota · Monoglobaceae	14%	3,279	0
Phascolarctobacterium succinatutens Bacillota · Acidaminococcaceae	15%	3,200	0
Hominifimenecus microfluidus Bacillota · Lachnospiraceae	16%	3,139	0
Massiliimalia timonensis Bacillota · Oscillospiraceae	14%	3,035	0
Lawsonibacter hominis Bacillota · Oscillospiraceae	15%	3,033	0
Longicatena caecimuris Bacillota · Erysipelotrichaceae	12%	3,023	0
Holdemania massiliensis Bacillota · Erysipelotrichaceae	12%	3,002	0
Massilimicrobiota timonensis Bacillota · Erysipelotrichaceae	15%	2,998	0
Anaerostipes caccae Bacillota · Lachnospiraceae	12%	2,997	0
Intestinimonas gabonensis Bacillota	15%	2,953	0
Faecalibacillus faecis Bacillota · Coprobacillaceae	13%	2,832	0
Coprobacillus cateniformis Bacillota · Coprobacillaceae	11%	2,745	0
Blautia faecicola Bacillota · Lachnospiraceae	13%	2,737	0
Streptococcus gordonii Bacillota · Streptococcaceae	9.4%	2,720	0
Candidatus Borkfalkia ceftriaxoniphila Bacillota · Christensenellaceae	13%	2,676	0
Streptococcus anginosus Bacillota · Streptococcaceae	7.9%	2,663	0
Provencibacterium massiliense Bacillota · Oscillospiraceae	12%	2,611	0
Jutongia hominis Bacillota · Lachnospiraceae	12%	2,605	0
Mogibacterium diversum Bacillota · Anaerovoracaceae	12%	2,604	0
Dielma fastidiosa Bacillota · Erysipelotrichaceae	9.6%	2,594	0
Dialister hominis Bacillota · Veillonellaceae	11%	2,528	0
Acidaminococcus intestini Bacillota · Acidaminococcaceae	11%	2,525	0
Blautia hydrogenotrophica Bacillota · Lachnospiraceae	10%	2,513	0
Lactococcus lactis Bacillota · Streptococcaceae	11%	2,510	219
Streptococcus sanguinis Bacillota · Streptococcaceae	9.4%	2,501	0
Streptococcus vestibularis Bacillota · Streptococcaceae	8.1%	2,467	0
Christensenella hongkongensis Bacillota · Christensenellaceae	11%	2,445	0
Streptococcus oralis Bacillota · Streptococcaceae	8.1%	2,444	0
Enterococcus faecium Bacillota · Enterococcaceae	5.4%	2,414	49
Anaerofilum hominis Bacillota · Oscillospiraceae	12%	2,364	0
Christensenella minuta Bacillota · Christensenellaceae	10%	2,360	0
Youxingia wuxianensis Bacillota · Oscillospiraceae	12%	2,327	0
Pseudoflavonifractor phocaeensis Bacillota · Oscillospiraceae	9.0%	2,312	0
Allofournierella massiliensis Bacillota · Oscillospiraceae	11%	2,308	0
Lentihominibacter hominis Bacillota · Anaerovoracaceae	11%	2,267	0
Enterococcus faecalis Bacillota · Enterococcaceae	6.5%	2,243	13
Holdemanella biformis Bacillota · Erysipelotrichaceae	9.9%	2,224	0
Gemella sanguinis Bacillota · Gemellaceae	9.7%	2,206	0
Massiliimalia massiliensis Bacillota · Oscillospiraceae	10%	2,204	0
Catenibacillus scindens Bacillota · Lachnospiraceae	12%	2,188	0
Anaerofustis stercorihominis Bacillota · Eubacteriaceae	10.0%	2,065	0
Clostridium lentum Bacillota · Clostridiaceae	10.0%	2,030	0
Roseburia zhanii Bacillota · Lachnospiraceae	10%	1,999	0
Diplocloster agilis Bacillota · Lachnospiraceae	7.8%	1,966	0
Merdimonas faecis Bacillota · Lachnospiraceae	9.2%	1,957	0
Pseudoruminococcus massiliensis Bacillota · Acutalibacteraceae	9.1%	1,916	0
Turicibacter sanguinis Bacillota · Turicibacteraceae	8.2%	1,887	0
Enterocloster hominis (ex Hitch et al. 2024) Bacillota · Clostridiaceae	6.9%	1,859	0
[Eubacterium] sulci Bacillota · Anaerovoracaceae	8.0%	1,857	0
Bianquea renquensis Bacillota · Bianqueaceae	8.9%	1,851	0
Luoshenia tenuis Bacillota · Christensenellaceae	8.5%	1,848	0
Ligaoa zhengdingensis Bacillota · Oscillospiraceae	9.7%	1,830	0
Anaerotruncus massiliensis (ex Togo et al. 2019) Bacillota · Oscillospiraceae	7.6%	1,819	0
Neglectibacter timonensis Bacillota · Oscillospiraceae	7.1%	1,805	0
Lactonifactor longoviformis Bacillota · Clostridiaceae	7.4%	1,722	0
Clostridium perfringens Bacillota · Clostridiaceae	5.9%	1,710	0
Jingyaoa shaoxingensis Bacillota · Lachnospiraceae	7.7%	1,649	0
Streptococcus mutans Bacillota · Streptococcaceae	5.4%	1,639	0
Anaerotignum lactatifermentans Bacillota · Anaerotignaceae	6.1%	1,638	0
Mediterraneibacter massiliensis Bacillota · Lachnospiraceae	6.7%	1,636	0
[Clostridium] methylpentosum Bacillota · Oscillospiraceae	5.5%	1,610	0
Yeguia hominis Bacillota · Yeguiaceae	8.7%	1,571	0
Claveliimonas bilis Bacillota · Lachnospiraceae	7.0%	1,544	0
Vescimonas fastidiosa Bacillota · Oscillospiraceae	7.5%	1,501	0
[Eubacterium] hominis Bacillota · Erysipelotrichaceae	6.2%	1,496	0
Streptococcus rubneri Bacillota · Streptococcaceae	6.9%	1,496	0
Lawsonibacter faecis Bacillota · Oscillospiraceae	6.4%	1,481	0
Lactobacillus gasseri Bacillota · Lactobacillaceae	4.2%	1,410	377
Ruminococcus bovis Bacillota · Oscillospiraceae	6.0%	1,384	0
Massilistercora timonensis Bacillota	6.5%	1,382	0
Megasphaera micronuciformis Bacillota · Veillonellaceae	3.6%	1,362	0
Ligilactobacillus salivarius Bacillota · Lactobacillaceae	3.7%	1,353	754
Amedibacillus dolichus Bacillota · Erysipelotrichaceae	5.1%	1,329	0
Lachnoclostridium edouardi Bacillota · Lachnospiraceae	6.0%	1,304	0
Emergencia timonensis Bacillota · Anaerovoracaceae	4.7%	1,301	0
Angelakisella massiliensis Bacillota · Oscillospiraceae	5.9%	1,271	0
Blautia schinkii Bacillota · Lachnospiraceae	5.4%	1,251	0
Eshraghiella crossota Bacillota · Lachnospiraceae	6.1%	1,193	0
Eubacterium callanderi Bacillota · Eubacteriaceae	4.6%	1,191	0
Butyricicoccus intestinisimiae Bacillota · Butyricicoccaceae	5.2%	1,178	0
Jutongia huaianensis Bacillota · Lachnospiraceae	5.9%	1,163	0
Lacticaseibacillus paracasei Bacillota · Lactobacillaceae	4.6%	1,159	747
Megasphaera massiliensis Bacillota · Veillonellaceae	6.2%	1,155	0
Limosilactobacillus fermentum Bacillota · Lactobacillaceae	2.7%	1,150	177
Streptococcus cristatus Bacillota · Streptococcaceae	3.8%	1,144	0
Enterococcus avium Bacillota · Enterococcaceae	3.6%	1,135	0
Streptococcus gallolyticus Bacillota · Streptococcaceae	3.6%	1,113	0
Diplocloster modestus Bacillota · Lachnospiraceae	5.2%	1,111	0
Limosilactobacillus mucosae Bacillota · Lactobacillaceae	3.4%	1,108	0
Lactobacillus delbrueckii Bacillota · Lactobacillaceae	5.3%	1,044	604
Feifania hominis Bacillota · Feifaniaceae	5.8%	1,039	0
Faecalitalea cylindroides Bacillota · Erysipelotrichaceae	4.2%	1,023	0
Longibaculum muris Bacillota · Coprobacillaceae	3.9%	1,023	0
Gemella morbillorum Bacillota · Gemellaceae	2.5%	1,021	0
Mogibacterium kristiansenii Bacillota · Anaerovoracaceae	4.3%	1,020	0
Veillonella tobetsuensis Bacillota · Veillonellaceae	4.3%	1,010	0
Lacticaseibacillus rhamnosus Bacillota · Lactobacillaceae	2.9%	1,004	1,504
Clostridium paraputrificum Bacillota · Clostridiaceae	3.6%	1,002	0
Ligilactobacillus ruminis Bacillota · Lactobacillaceae	4.6%	974	0
Thomasclavelia saccharogumia Bacillota · Coprobacillaceae	5.4%	971	0
Parvimonas micra Bacillota · Peptoniphilaceae	2.8%	967	0
Amedibacterium intestinale Bacillota · Erysipelotrichaceae	3.3%	958	0
Granulicatella adiacens Bacillota · Carnobacteriaceae	2.4%	928	0
Yanshouia hominis Bacillota · Oscillospiraceae	4.6%	852	0
Fumia xinanensis Bacillota · Oscillospiraceae	3.8%	851	0
Weissella confusa Bacillota · Lactobacillaceae	2.5%	844	0
Oscillibacter hominis Bacillota · Oscillospiraceae	4.3%	830	0
Lachnoclostridium phocaeense Bacillota · Lachnospiraceae	3.6%	825	0
Dorea phocaeensis Bacillota · Lachnospiraceae	2.5%	821	0
Peptostreptococcus stomatis Bacillota · Peptostreptococcaceae	1.6%	801	0
Enterocloster alcoholdehydrogenati Bacillota · Lachnospiraceae	3.8%	798	0
Congzhengia minquanensis Bacillota · Oscillospiraceae	4.0%	790	0
Dialister pneumosintes Bacillota · Veillonellaceae	<1%	783	0
Cuneatibacter caecimuris Bacillota · Lachnospiraceae	3.0%	777	0
Streptococcus lutetiensis Bacillota · Streptococcaceae	2.5%	768	0
Streptococcus constellatus Bacillota · Streptococcaceae	2.0%	734	0
Finegoldia magna Bacillota · Peptoniphilaceae	1.9%	733	0
Weissella cibaria Bacillota · Lactobacillaceae	2.2%	714	0
Brotaphodocola catenula Bacillota · Lachnospiraceae	3.1%	694	0
Bacillus subtilis Bacillota · Bacillaceae	4.8%	691	458
Mitsuokella jalaludinii Bacillota · Selenomonadaceae	3.6%	689	0
Anaerococcus obesiensis Bacillota · Peptoniphilaceae	1.7%	688	0
Lactococcus cremoris Bacillota · Streptococcaceae	3.0%	679	0
Gehongia tenuis Bacillota · Christensenellaceae	3.3%	677	0
Clostridioides difficile Bacillota · Peptostreptococcaceae	1.6%	668	0
Frisingicoccus caecimuris Bacillota · Lachnospiraceae	2.3%	664	0
Catenibacterium mitsuokai Bacillota · Coprobacillaceae	3.0%	649	0

Showing 1–250 of 983 Show 50 more