Pectobacteriaceae · Research

Saudi journal of gastroenterology · 2023

Composition of the gut microbiota in patients with inflammatory bowel disease in Saudi Arabia: A pilot study.

Al-Amrah H, Saadah OI, Mosli M, et al.

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Scientific reports · 2025

Distinct relative abundances in pathogens detected in mechanically ventilated patients with suspected pneumonia in the intensive care unit at King Abdulaziz University Hospital.

Algethamy H, Bokhary DH, Abushoshah I, et al.

Klebsiella pneumoniae

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Neoplasma · 2018

The study of bacteria in biopsies from Slovak colorectal adenoma and carcinoma patients.

Wachsmannova L, Majek J, Zajac V, et al.

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Microbiology spectrum · 2021

Characterizing Plasmids in Bacteria Species Relevant to Urinary Health.

Montelongo Hernandez C, Putonti C, Wolfe AJ

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International journal of systematic and evolutionary microbiology · 2021

Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces.

Kitahara M, Shigeno Y, Shime M, et al.

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Microbiology · 2025

Roles of human colonic bacteria in pectin utilization and associated cross-feeding networks revealed using synthetic co-cultures.

Solvang M, Farquharson FM, Horgan G, et al.

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Annals of intensive care · 2023

Bridging gut microbiota composition with extended-spectrum beta-lactamase Enterobacteriales faecal carriage in critically ill patients (microbe cohort study).

Prevel R, Enaud R, Orieux A, et al.

Sellimonas intestinalis

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BMC microbiology · 2026

Identification and functional characterization of Pseudomonas fluorescens as a novel intratumoral bacterium in colorectal cancer.

Qian Q, Li N, Cha S, et al.

Anaerotignum faecicola

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Journal of research in medical sciences · 2021

Microbial diversity and colonization patterns of two step-down care units from a tertiary care hospital.

Cruz-López F, Villarreal-Treviño L, Morfin-Otero R, et al.

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Nature microbiology · 2026

Synergy between Enterobacteriaceae and diet mediates competition between dominant Bacteroidales in the human gut.

Tawk C, El Mouali Y, Huang KD, et al.

Segatella copri

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Cell reports · 2024

Bifidobacteriaceae diversity in the human microbiome from a large-scale genome-wide analysis.

Pasolli E, Mauriello IE, Avagliano M, et al.

Bifidobacterium animalis

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Antibiotics · 2025

Antimicrobial Resistance Profiles of Clinically Relevant Enterobacteriaceae Isolates: A Retrospective Study at a Southern Italian Hospital.

Stornelli G, Marinacci B, Puca V, et al.

Klebsiella pneumoniae

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Bioengineered · 2021

The gut microbial diversity of colon cancer patients and the clinical significance.

He T, Cheng X, Xing C

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Scientific reports · 2024

Study of the intestinal microbiota composition and the effect of treatment with intensive chemotherapy in patients recovered from acute leukemia.

Vázquez X, Lumbreras-Iglesias P, Rodicio MR, et al.

Veillonella parvula

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AIMS microbiology · 2024

Metagenomic analysis of fecal samples in colorectal cancer Egyptians patients post colectomy: A pilot study.

Abo-Hammam RH, Salah M, Shabayek S, et al.

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Animal study PLoS neglected tropical diseases · 2024

Comparative analysis of the microbiota of sand fly vectors of Leishmania major and L. tropica in a mixed focus of cutaneous leishmaniasis in southeast Tunisia; ecotype shapes the bacterial community structure.

Tabbabi A, Mizushima D, Yamamoto DS, et al.

Enterococcus faecalis

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Genes · 2020

Classification of Changes in the Fecal Microbiota Associated with Colonic Adenomatous Polyps Using a Long-Read Sequencing Platform.

Wei PL, Hung CS, Kao YW, et al.

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Cancers · 2023

Mucosal Microbiome in Patients with Early Bowel Polyps: Inferences from Short-Read and Long-Read 16S rRNA Sequencing.

Welham Z, Li J, Engel AF, et al.

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The new microbiologica · 2020

Tracking over time the developing gut microbiota in newborns admitted to a neonatal intensive care unit during an outbreak caused by ESBL-producing Klebsiella pneumoniae.

Panelli S, Corbella M, Gazzola A, et al.

Klebsiella pneumoniae

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Arab journal of gastroenterology · 2019

Colonization of intestinal microbiota with carbapenemase-producing Enterobacteriaceae in paediatric intensive care units in Cairo, Egypt.

Ghaith DM, Mohamed ZK, Farahat MG, et al.

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Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2022

[Changes in the structure of intestinal mucosal flora in colorectal cancer patients].

Hu M, Chen K, Wang N, et al.

Bacteroides fragilis

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Animal study Probiotics and antimicrobial proteins · 2021

Biodiversity and Phylogenetic Relationships of Novel Bacteriocinogenic Strains Isolated from Animal's Droppings at the Zoological Garden of Lille, France.

Eveno M, Salouhi A, Belguesmia Y, et al.

Enterococcus faecalis

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Nature microbiology · 2022

Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects.

Kang JTL, Teo JJY, Bertrand D, et al.

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Frontiers in plant science · 2024

Bacterial community structure of Physalis peruviana L. fruit exocarp and the presence of pathogens with possible implications on food safety.

Tenea GN, Molina D

Klebsiella pneumoniae

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Systematic review Nutrients · 2022

The Potential of Pectins to Modulate the Human Gut Microbiota Evaluated by In Vitro Fermentation: A Systematic Review.

Pascale N, Gu F, Larsen N, et al.

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Gastroenterology research and practice · 2018

Colonic Mucosal Microbiota in Colorectal Cancer: A Single-Center Metagenomic Study in Saudi Arabia.

Alomair AO, Masoodi I, Alyamani EJ, et al.

Bacteroides fragilis

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European journal of clinical microbiology & infectious diseases · 2023

Microbial dynamics with CRC progression: a study of the mucosal microbiota at multiple sites in cancers, adenomatous polyps, and healthy controls.

Senthakumaran T, Moen AEF, Tannæs TM, et al.

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MicrobiologyOpen · 2025

Identification of a Differential Microbiological Signature of Extended-Spectrum ß-Lactamases Producing Escherichia Carriers in Spanish Community Children.

Cardinali-Benigni M, Khannous-Lleiffe O, Saus E, et al.

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Review Intestinal research · 2018

Impact of microbiota in colorectal carcinogenesis: lessons from experimental models.

Yu LC, Wei SC, Ni YH

Bacteroides fragilis

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International journal of antimicrobial agents · 2018

Composition of the intestinal microbiota in extended-spectrum β-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand.

Piewngam P, Quiñones M, Thirakittiwatthana W, et al.

Bacteroides uniformis

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NPJ precision oncology · 2025

Microbiome and biofilm insights from normal vs tumor tissues in Thai colorectal cancer patients.

Yincharoen P, Mordmuang A, Techarang T, et al.

Bacteroides fragilis

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Animal study Microbial pathogenesis · 2019

Cultivable microbiota and pulmonary lesions in polymicrobial bovine pneumonia.

Choudhary M, Choudhary BK, Chandra Ghosh R, et al.

Klebsiella pneumoniae

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Observational Scientific reports · 2021

Parvimonas micra, Peptostreptococcus stomatis, Fusobacterium nucleatum and Akkermansia muciniphila as a four-bacteria biomarker panel of colorectal cancer.

Osman MA, Neoh HM, Ab Mutalib NS, et al.

Akkermansia muciniphila

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Nature microbiology · 2021

Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients.

León-Sampedro R, DelaFuente J, Díaz-Agero C, et al.

Klebsiella pneumoniae

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Gut pathogens · 2026

Contrasting the gut microbiome in Colombian patients with diarrhea: a comparative metagenomic study in hospitalization and emergency room services.

Vega L, Birchenall-Jiménez CI, Aponte A, et al.

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Review MicrobiologyOpen · 2018

Metagenomic insights into the roles of Proteobacteria in the gastrointestinal microbiomes of healthy dogs and cats.

Moon CD, Young W, Maclean PH, et al.

Escherichia coli

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The Tohoku journal of experimental medicine · 2017

Determining the Possible Etiology of Hospital-Acquired Pneumonia Using a Clone Library Analysis in Japan.

Yatera K, Noguchi S, Yamasaki K, et al.

Klebsiella pneumoniae

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Frontiers in medicine · 2022

Intestinal Microbiota in Colorectal Adenoma-Carcinoma Sequence.

Hua H, Sun Y, He X, et al.

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Review Surgical infections · 2025

Acute Appendicitis and the Microbiome: A Review of Microbial Signatures.

Karikis I, Arda Y, Sanyal R, et al.

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Clinical laboratory · 2021

Exploring the Characteristics of Intestinal Microbiota in Hematologic Malignancy Patients via 16s rDNA High-Throughput Sequencing.

Pei Z, Xiaowei W, Yajuan L, et al.

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Food microbiology · 2023

Weather factors, soil microbiome, and bacteria-fungi interactions as drivers of the epiphytic phyllosphere communities of romaine lettuce.

Brandl MT, Mammel MK, Simko I, et al.

Escherichia coli

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Current microbiology · 2018

Altered Profiles of Gut Microbiota in Klebsiella pneumoniae-Induced Pyogenic Liver Abscess.

Chen N, Ling ZX, Jin TT, et al.

Klebsiella pneumoniae

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Observational Scientific reports · 2025

Microbiome analysis of gut microbiota in patients with colorectal polyps and healthy individuals.

Deng D, Zhao L, Song H, et al.

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Animal study Genetics and molecular research · 2017

Molecular detection by analysis of the 16S rRNA gene of fecal coliform bacteria from the two Korean Apodemus species (Apodemus agrarius and A. peninsulae).

Rahman MM, Yoon KB, Lim SJ, et al.

Escherichia coli

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Microbiology resource announcements · 2026

Complete genomes of Phascolarctobacterium faecium isolates obtained from pediatric mucosal-luminal interface aspirate samples.

Tanabe G, Mack DR, Stintzi A

Phascolarctobacterium faecium

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Frontiers in microbiology · 2019

Potential of Pectins to Beneficially Modulate the Gut Microbiota Depends on Their Structural Properties.

Larsen N, Bussolo de Souza C, Krych L, et al.

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Molecular biology reports · 2025

Assessing the role of Escherichia coli and Klebsiella pneumoniae in colorectal cancer oncogene expression: insights from microbial colonization phenotypes.

Davoody S, Tayebi Z, Sharif-Zak M, et al.

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BMC microbiology · 2019

The prevalence of the culturable human skin aerobic bacteria in Riyadh, Saudi Arabia.

Shami A, Al-Mijalli S, Pongchaikul P, et al.

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Observational BMC research notes · 2019

Sampling and diversity of Escherichia coli from the enteric microbiota in patients with Escherichia coli bacteraemia.

Mosavie M, Blandy O, Jauneikaite E, et al.

Escherichia coli

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Frontiers in molecular biosciences · 2021

Exploring Gut Microbiota in Patients with Colorectal Disease Based on 16S rRNA Gene Amplicon and Shallow Metagenomic Sequencing.

Liu Y, Li X, Yang Y, et al.

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