Randomized trial Nutrients · 2026 Sourdough Bread and Baker's Yeast Bread Affect Gut Symptoms and Targeted Gut Microbial Taxa Differently: A Randomised Controlled Trial. Watters SIN, Henriksen C, Gjøvik M, et al. Alistipes putredinisAlistipes shahiiBifidobacterium adolescentisBifidobacterium longum PubMed ↗
Review World journal of nephrology · 2026 Gut-kidney axis: Dysbiosis and renal disease. Salvadori M, Rosso G Alistipes shahii PubMed ↗
Observational Inflammatory bowel diseases · 2026 Altered Gut Microbiota in Pediatric Quiescent Crohn's Disease Patients with Iron Deficiency Anemia. Gordon ES, Goc J, Grier A, et al. Alistipes shahiiAnaerobutyricum soehngenii PubMed ↗
Observational BMC endocrine disorders · 2025 Gut microbiota dysbiosis and short-chain fatty acid depletion in phlegm-dampness polycystic ovary syndrome: a cross-sectional 16S rRNA sequencing analysis. Xia XY, Chen Y, Zhang XJ, et al. Alistipes shahiiBlautia wexlerae PubMed ↗
Observational American journal of physiology. Heart and circulatory physiology · 2025 Altered tryptophan metabolism and gut immune crosstalk in hypertensive middle-aged women. Shah S, Mu C, Shen-Tu G, et al. Alistipes shahiiBacteroides stercoris PubMed ↗
Observational Medical sciences · 2025 Association of Gut Dysbiosis with Disease Phenotype and Treatment in Systemic Lupus Erythematosus. Medina-Martínez I, Gil-Gutiérrez R, García-García J, et al. Akkermansia muciniphilaAlistipes shahiiLactobacillus gasseriPhocaeicola dorei PubMed ↗
Observational NPJ biofilms and microbiomes · 2025 Mediation effect and metabolic pathways of gut microbiota in the associations between lifestyles and dyslipidemia. Zeng L, Yu B, Zeng P, et al. Alistipes shahiiLachnospira eligens PubMed ↗
Observational Polish journal of microbiology · 2025 Comparative Analysis of Microbiological Profiles and Antibiotic Resistance Genes in Subjects with Colorectal Cancer and Healthy Individuals. Li J, Zhu Y, Chang Q, et al. Alistipes finegoldiiAlistipes shahiiBifidobacterium bifidumBifidobacterium breve +1 more PubMed ↗
Observational EBioMedicine · 2024 Association between seizure reduction during ketogenic diet treatment of epilepsy and changes in circulatory metabolites and gut microbiota composition. Dahlin M, Wheelock CE, Prast-Nielsen S Alistipes communisAlistipes shahiiEscherichia coliFaecalibacterium prausnitzii PubMed ↗
Randomized trial Food & function · 2024 Effect of dark sweet cherry (Prunus avium) supplementation on the fecal microbiota, metabolic endotoxemia, and intestinal permeability in obese subjects: a single-blind randomized trial. Arbizu S, Mertens-Talcott SU, Talcott S, et al. [Clostridium] leptumAlistipes shahiiAnaerostipes hadrusPhocaeicola vulgatus +1 more PubMed ↗
Observational Nature communications · 2024 Gut metagenomes of Asian octogenarians reveal metabolic potential expansion and distinct microbial species associated with aging phenotypes. Ravikrishnan A, Wijaya I, Png E, et al. Alistipes shahiiBacteroides xylanisolvensFaecalibacterium prausnitziiKlebsiella pneumoniae +1 more PubMed ↗
Observational The American journal of clinical nutrition · 2024 Plant-based diets and the gut microbiome: findings from the Baltimore Longitudinal Study of Aging. Shen X, Tilves C, Kim H, et al. Alistipes shahiiBacteroides thetaiotaomicronBlautia wexleraeFaecalibacterium prausnitzii +2 more PubMed ↗
Observational Microbiology spectrum · 2022 Characteristics of Gut Microbiota in Patients with GH-Secreting Pituitary Adenoma. Lin B, Wang M, Gao R, et al. Alistipes shahiiOdoribacter splanchnicus PubMed ↗
Randomized trial Molecular nutrition & food research · 2021 Flexibility of Gut Microbiota in Ageing Individuals during Dietary Fiber Long-Chain Inulin Intake. Kiewiet MBG, Elderman ME, El Aidy S, et al. Alistipes shahiiAnaerostipes hadrusParabacteroides distasonis PubMed ↗
Briefings in bioinformatics · 2026 CAM-Net: a context-aware network for identifying reliable microbial relations via optimal consortium. Zhang J, Xu W, Xing J, et al. Akkermansia muciniphilaAlistipes shahii PubMed ↗
Medicine · 2026 Causal relationship between gut microbiota and rheumatoid arthritis: A bidirectional 2-sample Mendelian randomization study. Zhang S, Li Y, Cheng H, et al. Alistipes shahiiBifidobacterium breveLactococcus lactis PubMed ↗
Oncoimmunology · 2026 Alistipes and Eggerthella shape the response to oncolytic adenovirus therapy in mice and humans through short-chain fatty acid metabolism. van der Heijden M, Clubb JHA, Erawijantari PP, et al. Alistipes shahii PubMed ↗
Cell metabolism · 2026 Gut microbial metabolism via hippocampal indole-AhR signaling regulates emotional symptoms. Wang TT, Luo YJ, Feng W, et al. Alistipes shahii PubMed ↗
Experimental biology and medicine · 2026 The effect of short-term consumption of Bifidobacterium bifidum on the gut microbiome of obese individuals. Burakova I, Smirnova Y, Morozova P, et al. Bifidobacterium bifidumAlistipes putredinisAlistipes shahiiBacteroides uniformis +2 more PubMed ↗
PloS one · 2025 The ex vivo effects of ethanolic extractions of black cumin seed, turmeric root, and Ceylon cinnamon bark on the human gut microbiota. Mahalak KK, Narrowe AB, Liu L, et al. Alistipes onderdonkiiAlistipes shahiiCandidatus Cibiobacter qucibialisDysosmobacter welbionis +1 more PubMed ↗
PloS one · 2025 Body mass index distinctly modulates the associations between Alistipes and CRP/IL-6 in metabolic and lupus inflammatory features. Chero-Sandoval L, Higuera-Gómez A, de Cuevillas B, et al. Alistipes shahii PubMed ↗
Journal of applied microbiology · 2025 Therapeutic effect of Faecalibacterium longum CM04-06 on DSS-induced ulcerative colitis in mice. Li X, He N, Wang H, et al. Alistipes onderdonkiiAlistipes shahiiBifidobacterium animalis PubMed ↗
Nature immunology · 2025 Microbiota-shaped neutrophil senescence regulates sexual dimorphism in bladder cancer. Zhu Q, Zhang G, Cao M, et al. Alistipes shahii PubMed ↗
Journal of translational medicine · 2024 Mendelian randomization analyses support causal relationships between gut microbiome and longevity. Chen S, Chen W, Wang X, et al. Alistipes senegalensisAlistipes shahiiPhocaeicola massiliensis PubMed ↗
International journal of biological macromolecules · 2024 Fiber from elicited butternut pumpkin (Cucurbita moschata D. cv. Ariel) modulates the human intestinal microbiota dysbiosis. Nieto JA, Rosés C, García-Ibáñez P, et al. [Ruminococcus] lactarisAkkermansia muciniphilaAlistipes shahiiCoprococcus catus +2 more PubMed ↗
mSphere · 2024 Deep metagenomic characterization of the gut virome in pregnant women with preeclampsia. Lv L-J, Wen J-Y, Zhang Y, et al. Alistipes shahii PubMed ↗
BMC microbiology · 2023 Diagnosis of Crohn's disease and ulcerative colitis using the microbiome. Kang DY, Park JL, Yeo MK, et al. Alistipes shahii PubMed ↗
European journal of medical research · 2023 Roxadustat alleviates the inflammatory status in patients receiving maintenance hemodialysis with erythropoiesis-stimulating agent resistance by increasing the short-chain fatty acids producing gut bacteria. Zhao XN, Liu SX, Wang ZZ, et al. Alistipes shahiiAnaerobutyricum halliiRuminococcus bromii PubMed ↗
Oncoimmunology · 2023 Non-small cell lung cancer patients treated with Anti-PD1 immunotherapy show distinct microbial signatures and metabolic pathways according to progression-free survival and PD-L1 status. Dora D, Ligeti B, Kovacs T, et al. Alistipes finegoldiiAlistipes shahiiBifidobacterium breveStreptococcus salivarius PubMed ↗
BMC microbiology · 2023 Fine-scale spatial variation shape fecal microbiome diversity and composition in black-tailed prairie dogs (Cynomys ludovicianus). Neha SA, Salazar-Bravo J Alistipes shahii PubMed ↗
BMC genomics · 2022 Machine learning framework for gut microbiome biomarkers discovery and modulation analysis in large-scale obese population. Liu Y, Zhu J, Wang H, et al. Akkermansia muciniphilaAlistipes finegoldiiAlistipes shahiiBacteroides eggerthii +4 more PubMed ↗
Journal of agricultural and food chemistry · 2021 The α-Helical Cap Domain of a Novel Esterase from Gut Alistipes shahii Shaping the Substrate-Binding Pocket. Wei X, Wang YL, Wen BT, et al. Alistipes shahii PubMed ↗
Gut · 2021 Interplay between diet and gut microbiome, and circulating concentrations of trimethylamine N-oxide: findings from a longitudinal cohort of US men. Li J, Li Y, Ivey KL, et al. Alistipes shahii PubMed ↗
The Journal of asthma · 2026 Genetically predicted gut microbiota and risk of pediatric asthma and food allergy in East Asian populations: a two-sample Mendelian randomization study. Han Z, Zang C, Zhang C, et al. Alistipes shahii PubMed ↗
Current research in microbial sciences · 2026 Gut microbial diversity and candidate keystone taxa in Indian tribes: Insights across lifestyle-ecological continuum and health associations. Mollick SA, Khual GK, Ghosh A, et al. Alistipes shahiiBifidobacterium longumBlautia wexleraeFlavonifractor plautii +2 more PubMed ↗
Biomedicines · 2026 Tracking Gut Homeostasis: Key Taxa Transitions and Core Network Hyper-Connectivity as Early Signals of Dysbiosis. Xu Y, Li C, Zhao Y, et al. Alistipes shahii PubMed ↗
Frontiers in nutrition · 2026 Microbiota-metabolites interaction associated with glycemic improvement following a dietary herbal intervention in type 2 diabetes. Li B, Ren Z, Li H, et al. Alistipes shahii PubMed ↗
PloS one · 2022 Time series strain tracking analysis post fecal transplantation identifies individual specific patterns of fecal dominant donor, recipient, and unrelated microbial strains. Koo H, Morrow CD Alistipes onderdonkiiAlistipes putredinisAlistipes shahiiParabacteroides merdae +1 more PubMed ↗
Animal study BMC microbiology · 2026 Multi-kingdom fecal microbiome and virus-host interactions associated with growth performance of indigenous beef calves in Guizhou. Guo W, Yu J, Wang W, et al. Alistipes onderdonkiiAlistipes shahii PubMed ↗
Animal study mSystems · 2025 Gut commensal Alistipes shahii improves experimental colitis in mice with reduced intestinal epithelial damage and cytokine secretion. Lin X, Xu M, Lan R, et al. Alistipes shahii PubMed ↗
Animal study Nutrients · 2024 Palmitoleic Acid Inhibits Hepatotoxic Effects by Reducing Trimethylamine-N-Oxide (TMAO) Formation in High L-Carnitine-Treated Mice. Han Q, Liu Y, Liu X, et al. Alistipes shahiiParabacteroides distasonisPhocaeicola vulgatus PubMed ↗
Animal study Microbiome · 2023 Selection for environmental variance shifted the gut microbiome composition driving animal resilience. Casto-Rebollo C, Argente MJ, García ML, et al. Alistipes putredinisAlistipes shahiiOdoribacter splanchnicusRuminococcus bromii PubMed ↗
Animal study Archives of biochemistry and biophysics · 2021 Proteomic and microbial assessments on the effect of Antrodia cinnamomea in C57BL/6 mice. Tsai YT, Ruan JW, Chang CS, et al. Alistipes shahii PubMed ↗
Observational Nutrients · 2020 Changes in the Intestinal Microbiome during a Multispecies Probiotic Intervention in Compensated Cirrhosis. Horvath A, Durdevic M, Leber B, et al. Alistipes shahiiFaecalibacterium prausnitziiPhocaeicola vulgatus PubMed ↗
Review Frontiers in immunology · 2020 The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health. Parker BJ, Wearsch PA, Veloo ACM, et al. Alistipes communisAlistipes finegoldiiAlistipes ihumiiAlistipes indistinctus +4 more PubMed ↗
International journal of molecular sciences · 2020 The Gut-Muscle Axis in Older Subjects with Low Muscle Mass and Performance: A Proof of Concept Study Exploring Fecal Microbiota Composition and Function with Shotgun Metagenomics Sequencing. Ticinesi A, Mancabelli L, Tagliaferri S, et al. Alistipes shahiiFaecalibacterium prausnitziiRoseburia inulinivorans PubMed ↗
International journal of systematic and evolutionary microbiology · 2020 Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov. Sakamoto M, Ikeyama N, Ogata Y, et al. Alistipes communisAlistipes onderdonkiiAlistipes shahii PubMed ↗
PloS one · 2019 Sharing of gut microbial strains between selected individual sets of twins cohabitating for decades. Koo H, Hakim JA, Crossman DK, et al. Alistipes shahiiBacteroides uniformisBifidobacterium adolescentisCoprococcus eutactus +2 more PubMed ↗
Frontiers in microbiology · 2020 Metagenomics Study Reveals Changes in Gut Microbiota in Centenarians: A Cohort Study of Hainan Centenarians. Luan Z, Sun G, Huang Y, et al. Akkermansia muciniphilaAlistipes finegoldiiAlistipes shahiiBacteroides intestinalis +3 more PubMed ↗
World journal of gastrointestinal oncology · 2019 Correlation between invasive microbiota in margin-surrounding mucosa and anastomotic healing in patients with colorectal cancer. Li YD, He KX, Zhu WF Alistipes shahii PubMed ↗