Review African journal of primary health care & family medicine · 2025 Gut microbiota of sub-Saharan Africa infants exposed to antiretroviral therapy: Scoping review. Mudhluli TE, Mashingaidze-Mano R, Chitsike I, et al. Bifidobacterium longum PubMed ↗
Clinical trial Frontiers in cellular and infection microbiology · 2025 Interactions between gut microbiota, plasma metabolome and brain function in the setting of a HIV cure trial. Borgognone A, Prats A, Sharma AA, et al. Streptococcus thermophilusSutterella wadsworthensis PubMed ↗
Observational Nature · 2025 Expanding the human gut microbiome atlas of Africa. Maghini DG, Oduaran OH, Olubayo LAI, et al. Dysosmobacter welbionis PubMed ↗
Systematic review Special care in dentistry · 2025 Subgingival Bacterial Microbiota Profile of People Living With HIV-1 Under HAART: A Systematic Review. de Macedo TP, Gonçalves C, Gonçalves LS, et al. Enterococcus faecalis PubMed ↗
Observational Menopause · 2023 The menopause-related gut microbiome: associations with metabolomics, inflammatory protein markers, and cardiometabolic health in women with HIV. Wang Y, Sharma A, Weber KM, et al. Bifidobacterium adolescentisFaecalibacterium prausnitzii PubMed ↗
Observational AIDS · 2022 Multiomic analysis reveals microbiome-related relationships between cocaine use and metabolites. Martinez SS, Stebliankin V, Hernandez J, et al. Bifidobacterium adolescentis PubMed ↗
Randomized trial Scientific reports · 2022 Genital microbiota of women using a 90 day tenofovir or tenofovir and levonorgestrel intravaginal ring in a placebo controlled randomized safety trial in Kenya. Dabee S, Mugo N, Mudhune V, et al. Lactobacillus gasseri PubMed ↗
Observational AIDS · 2022 A pilot study of microbial signatures of liver disease in those with HIV mono-infection in Rio de Janeiro, Brazil. Yanavich C, Perazzo H, Li F, et al. Agathobacter rectalisAkkermansia muciniphilaBacteroides fragilisBacteroides stercoris +5 more PubMed ↗
Observational Microbiome · 2021 Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM. Chen Y, Lin H, Cole M, et al. [Ruminococcus] torquesAkkermansia muciniphilaAlistipes onderdonkiiAlistipes putredinis +8 more PubMed ↗
Observational Menopause · 2021 Menopausal status and observed differences in the gut microbiome in women with and without HIV infection. Peters BA, Xue X, Wang Z, et al. Segatella copri PubMed ↗
Observational BMC microbiology · 2021 Altered gut microbiota correlate with different immune responses to HAART in HIV-infected individuals. Xie Y, Sun J, Wei L, et al. Agathobacter rectalisMediterraneibacter gnavus PubMed ↗
Applied and environmental microbiology · 2026 Characterization of vaginal lactobacilli from South African women toward the development of a biotherapeutic to optimize the vaginal microbiome. Wilson J, Amir Hamzah AS, Jordan C, et al. Ligilactobacillus salivarius PubMed ↗
Journal of acquired immune deficiency syndromes · 2026 Minimal Disruption of the Rectal Microbiome in Acute and Early Untreated HIV Infection. Trunfio M, Gianella S, Gaitan N, et al. Akkermansia muciniphila PubMed ↗
JCI insight · 2026 Multi-omics links microbial dysbiosis, systemic inflammation, and metabolomic disruptions to SNAE risk in treated HIV. Basting CM, Anderson J, Escandón K, et al. Akkermansia muciniphilaBacteroides uniformis PubMed ↗
EBioMedicine · 2026 Multi-omics analysis of the gut microbiome and carotid artery atherosclerosis in men with and without HIV. Wang Z, Wang Y, Peters BA, et al. Adlercreutzia equolifaciens PubMed ↗
Biology direct · 2026 Resilient gut microbiome is linked to immune control in HIV-1 infection. Silva JMM, Azevedo JLLC, Bezerra KG, et al. Anaerobutyricum halliiBacteroides uniformisPhocaeicola vulgatus PubMed ↗
Frontiers in cellular and infection microbiology · 2025 Metagenomic analysis of blood microbiota alterations: insights into HIV progression and immune restoration. Chen Y, Zhang R, Wen J, et al. Bifidobacterium longum PubMed ↗
GeroScience · 2025 Sex specific gut bacterial community structure: implications for frailty risk in people with HIV. Zaparte A, Lammons JW, Taylor CM, et al. Eubacterium ventriosum PubMed ↗
Journal of the Pediatric Infectious Diseases Society · 2025 Effect of maternal HIV status on the early neonatal microbiome. McGann CM, Strysko J, Bayani O, et al. Enterococcus faeciumKlebsiella pneumoniae PubMed ↗
Frontiers in immunology · 2025 Gut microbiota dysbiosis in people living with HIV who have cancer: novel insights and diagnostic potential. Xie Z, Huang Q, Wen L, et al. Phocaeicola vulgatus PubMed ↗
International journal of molecular sciences · 2025 Distinct Gut Microbiota Signatures Are Associated with Severity of Metabolic Dysfunction-Associated Steatotic Liver Disease in People with HIV. Righetti R, Cinque F, Lebouché B, et al. [Eubacterium] siraeumAnaerobutyricum halliiMediterraneibacter gnavus PubMed ↗
Microbiology spectrum · 2025 The human gut microbiome and its metabolic pathway dynamics before and during HIV antiretroviral therapy. Dolo O, Coulibaly F, Somboro AM, et al. Ruminococcus bromii PubMed ↗
The Journal of infectious diseases · 2025 Associations Between the Gut Microbiome, Inflammation, and Cardiovascular Profiles in People With Human Immunodeficiency Virus. MacCann R, Li J, Leon AAG, et al. Bifidobacterium pseudocatenulatumRuminococcus bromii PubMed ↗
The Journal of infectious diseases · 2025 Use of an Ethinyl Estradiol/Etonogestrel Vaginal Ring Alters Vaginal Microbial Communities in Women With HIV. Tobin NH, Brooker SL, Li F, et al. Lactobacillus gasseri PubMed ↗
Annals of medicine · 2025 Decreased intestinal abundance of Akkermansia muciniphila is associated with metabolic disorders among people living with HIV. Qian Z, Chen S, Liao X, et al. Akkermansia muciniphila PubMed ↗
Mucosal immunology · 2025 Microbial remodeling of gut tryptophan metabolism and indole-3-lactate production regulate epithelial barrier repair and viral suppression in human and simian immunodeficiency virus infections. Rocha CS, Alexander KL, Herrera C, et al. Bifidobacterium longum PubMed ↗
JCI insight · 2024 Transcriptome and microbiome-immune changes across preinvasive and invasive anal cancer lesions. Lacunza E, Fink V, Salas ME, et al. Bacteroides fragilis PubMed ↗
European journal of immunology · 2024 HIV rebound in HIV controllers is associated with a specific fecal microbiome profile. Cai Y, Podlaha O, Deeks SG, et al. Alistipes putredinis PubMed ↗
International journal of molecular sciences · 2024 A Two-Faced Gut Microbiome: Butyrogenic and Proinflammatory Bacteria Predominate in the Intestinal Milieu of People Living with HIV from Western Mexico. Baltazar-Díaz TA, Andrade-Villanueva JF, Sánchez-Álvarez P, et al. Segatella copri PubMed ↗
Microbiology spectrum · 2024 Longitudinal gut microbiota composition of South African and Nigerian infants in relation to tetanus vaccine responses. Iwase SC, Osawe S, Happel A-U, et al. Bifidobacterium longum PubMed ↗
Frontiers in cellular and infection microbiology · 2024 In vitro antibacterial activity of antiretroviral drugs on key commensal bacteria from the human microbiota. Rubio-Garcia E, Ferrando N, Martin N, et al. Klebsiella pneumoniae PubMed ↗
BMC complementary medicine and therapies · 2023 Bifidobacterium infantis supplementation versus placebo in early life to improve immunity in infants exposed to HIV: a protocol for a randomized trial. Happel AU, Rametse L, Perumaul B, et al. Bifidobacterium longum PubMed ↗
mSystems · 2023 Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals. Guo X, Wang Z, Qu M, et al. Anaerobutyricum halliiPhocaeicola plebeius PubMed ↗
NPJ biofilms and microbiomes · 2023 Oral and anal microbiome from HIV-exposed individuals: role of host-associated factors in taxa composition and metabolic pathways. Lacunza E, Fink V, Salas ME, et al. Blautia obeumCoprococcus comes PubMed ↗
Microbiology spectrum · 2023 Microbiomes Detected by Bronchoalveolar Lavage Fluid Metagenomic Next-Generation Sequencing among HIV-Infected and Uninfected Patients with Pulmonary Infection. Tan Y, Chen Z, Zeng Z, et al. Klebsiella pneumoniae PubMed ↗
Microbiome · 2023 Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection. Wang Z, Peters BA, Bryant M, et al. Odoribacter splanchnicusRoseburia hominisRoseburia inulinivorans PubMed ↗
Frontiers in immunology · 2022 Multi-trial analysis of HIV-1 envelope gp41-reactive antibodies among global recipients of candidate HIV-1 vaccines. Mayer-Blackwell K, Johnson AM, Potchen N, et al. Blautia wexlerae PubMed ↗
Microbiome · 2022 Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding. Grant-Beurmann S, Jumare J, Ndembi N, et al. Bifidobacterium longum PubMed ↗
PloS one · 2021 Alterations in children's sub-dominant gut microbiota by HIV infection and anti-retroviral therapy. Nguyen QT, Ishizaki A, Bi X, et al. Bacteroides fragilis PubMed ↗
Journal of neuroimmune pharmacology · 2021 Chronic Opioid Administration is Associated with Prevotella-dominated Dysbiosis in SIVmac251 Infected, cART-treated Macaques. Johnson SD, Fox HS, Buch S, et al. Segatella copri PubMed ↗