Review African journal of primary health care & family medicine · 2025 Gut microbiota of sub-Saharan Africa infants exposed to antiretroviral therapy: Scoping review. Mudhluli TE, Mashingaidze-Mano R, Chitsike I, et al. Bifidobacterium longum PubMed ↗
Clinical trial Frontiers in cellular and infection microbiology · 2025 Interactions between gut microbiota, plasma metabolome and brain function in the setting of a HIV cure trial. Borgognone A, Prats A, Sharma AA, et al. Streptococcus thermophilusSutterella wadsworthensis PubMed ↗
Observational Nature · 2025 Expanding the human gut microbiome atlas of Africa. Maghini DG, Oduaran OH, Olubayo LAI, et al. Dysosmobacter welbionis PubMed ↗
Systematic review Special care in dentistry · 2025 Subgingival Bacterial Microbiota Profile of People Living With HIV-1 Under HAART: A Systematic Review. de Macedo TP, Gonçalves C, Gonçalves LS, et al. Enterococcus faecalis PubMed ↗
Observational Menopause · 2023 The menopause-related gut microbiome: associations with metabolomics, inflammatory protein markers, and cardiometabolic health in women with HIV. Wang Y, Sharma A, Weber KM, et al. Bifidobacterium adolescentisFaecalibacterium prausnitzii PubMed ↗
Observational AIDS · 2022 Multiomic analysis reveals microbiome-related relationships between cocaine use and metabolites. Martinez SS, Stebliankin V, Hernandez J, et al. Bifidobacterium adolescentis PubMed ↗
Randomized trial Scientific reports · 2022 Genital microbiota of women using a 90 day tenofovir or tenofovir and levonorgestrel intravaginal ring in a placebo controlled randomized safety trial in Kenya. Dabee S, Mugo N, Mudhune V, et al. Lactobacillus gasseri PubMed ↗
Observational AIDS · 2022 A pilot study of microbial signatures of liver disease in those with HIV mono-infection in Rio de Janeiro, Brazil. Yanavich C, Perazzo H, Li F, et al. Agathobacter rectalisAkkermansia muciniphilaBacteroides fragilisBacteroides stercoris +5 more PubMed ↗
Observational Microbiome · 2021 Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM. Chen Y, Lin H, Cole M, et al. [Ruminococcus] torquesAkkermansia muciniphilaAlistipes onderdonkiiAlistipes putredinis +8 more PubMed ↗
Observational Menopause · 2021 Menopausal status and observed differences in the gut microbiome in women with and without HIV infection. Peters BA, Xue X, Wang Z, et al. Segatella copri PubMed ↗
Observational BMC microbiology · 2021 Altered gut microbiota correlate with different immune responses to HAART in HIV-infected individuals. Xie Y, Sun J, Wei L, et al. Agathobacter rectalisMediterraneibacter gnavus PubMed ↗
Applied and environmental microbiology · 2026 Characterization of vaginal lactobacilli from South African women toward the development of a biotherapeutic to optimize the vaginal microbiome. Wilson J, Amir Hamzah AS, Jordan C, et al. Ligilactobacillus salivarius PubMed ↗
Journal of acquired immune deficiency syndromes · 2026 Minimal Disruption of the Rectal Microbiome in Acute and Early Untreated HIV Infection. Trunfio M, Gianella S, Gaitan N, et al. Akkermansia muciniphila PubMed ↗
JCI insight · 2026 Multi-omics links microbial dysbiosis, systemic inflammation, and metabolomic disruptions to SNAE risk in treated HIV. Basting CM, Anderson J, Escandón K, et al. Akkermansia muciniphilaBacteroides uniformis PubMed ↗
EBioMedicine · 2026 Multi-omics analysis of the gut microbiome and carotid artery atherosclerosis in men with and without HIV. Wang Z, Wang Y, Peters BA, et al. Adlercreutzia equolifaciens PubMed ↗
Biology direct · 2026 Resilient gut microbiome is linked to immune control in HIV-1 infection. Silva JMM, Azevedo JLLC, Bezerra KG, et al. Anaerobutyricum halliiBacteroides uniformisPhocaeicola vulgatus PubMed ↗
Frontiers in cellular and infection microbiology · 2025 Metagenomic analysis of blood microbiota alterations: insights into HIV progression and immune restoration. Chen Y, Zhang R, Wen J, et al. Bifidobacterium longum PubMed ↗
GeroScience · 2025 Sex specific gut bacterial community structure: implications for frailty risk in people with HIV. Zaparte A, Lammons JW, Taylor CM, et al. Eubacterium ventriosum PubMed ↗
Journal of the Pediatric Infectious Diseases Society · 2025 Effect of maternal HIV status on the early neonatal microbiome. McGann CM, Strysko J, Bayani O, et al. Enterococcus faeciumKlebsiella pneumoniae PubMed ↗
Frontiers in immunology · 2025 Gut microbiota dysbiosis in people living with HIV who have cancer: novel insights and diagnostic potential. Xie Z, Huang Q, Wen L, et al. Phocaeicola vulgatus PubMed ↗
International journal of molecular sciences · 2025 Distinct Gut Microbiota Signatures Are Associated with Severity of Metabolic Dysfunction-Associated Steatotic Liver Disease in People with HIV. Righetti R, Cinque F, Lebouché B, et al. [Eubacterium] siraeumAnaerobutyricum halliiMediterraneibacter gnavus PubMed ↗
Microbiology spectrum · 2025 The human gut microbiome and its metabolic pathway dynamics before and during HIV antiretroviral therapy. Dolo O, Coulibaly F, Somboro AM, et al. Ruminococcus bromii PubMed ↗
The Journal of infectious diseases · 2025 Associations Between the Gut Microbiome, Inflammation, and Cardiovascular Profiles in People With Human Immunodeficiency Virus. MacCann R, Li J, Leon AAG, et al. Bifidobacterium pseudocatenulatumRuminococcus bromii PubMed ↗
The Journal of infectious diseases · 2025 Use of an Ethinyl Estradiol/Etonogestrel Vaginal Ring Alters Vaginal Microbial Communities in Women With HIV. Tobin NH, Brooker SL, Li F, et al. Lactobacillus gasseri PubMed ↗
Annals of medicine · 2025 Decreased intestinal abundance of Akkermansia muciniphila is associated with metabolic disorders among people living with HIV. Qian Z, Chen S, Liao X, et al. Akkermansia muciniphila PubMed ↗
Mucosal immunology · 2025 Microbial remodeling of gut tryptophan metabolism and indole-3-lactate production regulate epithelial barrier repair and viral suppression in human and simian immunodeficiency virus infections. Rocha CS, Alexander KL, Herrera C, et al. Bifidobacterium longum PubMed ↗
JCI insight · 2024 Transcriptome and microbiome-immune changes across preinvasive and invasive anal cancer lesions. Lacunza E, Fink V, Salas ME, et al. Bacteroides fragilis PubMed ↗
European journal of immunology · 2024 HIV rebound in HIV controllers is associated with a specific fecal microbiome profile. Cai Y, Podlaha O, Deeks SG, et al. Alistipes putredinis PubMed ↗
International journal of molecular sciences · 2024 A Two-Faced Gut Microbiome: Butyrogenic and Proinflammatory Bacteria Predominate in the Intestinal Milieu of People Living with HIV from Western Mexico. Baltazar-Díaz TA, Andrade-Villanueva JF, Sánchez-Álvarez P, et al. Segatella copri PubMed ↗
Microbiology spectrum · 2024 Longitudinal gut microbiota composition of South African and Nigerian infants in relation to tetanus vaccine responses. Iwase SC, Osawe S, Happel A-U, et al. Bifidobacterium longum PubMed ↗
Frontiers in cellular and infection microbiology · 2024 In vitro antibacterial activity of antiretroviral drugs on key commensal bacteria from the human microbiota. Rubio-Garcia E, Ferrando N, Martin N, et al. Klebsiella pneumoniae PubMed ↗
BMC complementary medicine and therapies · 2023 Bifidobacterium infantis supplementation versus placebo in early life to improve immunity in infants exposed to HIV: a protocol for a randomized trial. Happel AU, Rametse L, Perumaul B, et al. Bifidobacterium longum PubMed ↗
mSystems · 2023 Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals. Guo X, Wang Z, Qu M, et al. Anaerobutyricum halliiPhocaeicola plebeius PubMed ↗
NPJ biofilms and microbiomes · 2023 Oral and anal microbiome from HIV-exposed individuals: role of host-associated factors in taxa composition and metabolic pathways. Lacunza E, Fink V, Salas ME, et al. Blautia obeumCoprococcus comes PubMed ↗
Microbiology spectrum · 2023 Microbiomes Detected by Bronchoalveolar Lavage Fluid Metagenomic Next-Generation Sequencing among HIV-Infected and Uninfected Patients with Pulmonary Infection. Tan Y, Chen Z, Zeng Z, et al. Klebsiella pneumoniae PubMed ↗
Microbiome · 2023 Gut microbiota, circulating inflammatory markers and metabolites, and carotid artery atherosclerosis in HIV infection. Wang Z, Peters BA, Bryant M, et al. Odoribacter splanchnicusRoseburia hominisRoseburia inulinivorans PubMed ↗
Frontiers in immunology · 2022 Multi-trial analysis of HIV-1 envelope gp41-reactive antibodies among global recipients of candidate HIV-1 vaccines. Mayer-Blackwell K, Johnson AM, Potchen N, et al. Blautia wexlerae PubMed ↗
Microbiome · 2022 Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding. Grant-Beurmann S, Jumare J, Ndembi N, et al. Bifidobacterium longum PubMed ↗
PloS one · 2021 Alterations in children's sub-dominant gut microbiota by HIV infection and anti-retroviral therapy. Nguyen QT, Ishizaki A, Bi X, et al. Bacteroides fragilis PubMed ↗
Journal of neuroimmune pharmacology · 2021 Chronic Opioid Administration is Associated with Prevotella-dominated Dysbiosis in SIVmac251 Infected, cART-treated Macaques. Johnson SD, Fox HS, Buch S, et al. Segatella copri PubMed ↗
Animal study Journal of neuroinflammation · 2023 Cannabinoids modulate the microbiota-gut-brain axis in HIV/SIV infection by reducing neuroinflammation and dysbiosis while concurrently elevating endocannabinoid and indole-3-propionate levels. McDew-White M, Lee E, Premadasa LS, et al. Faecalibacterium prausnitzii PubMed ↗
Meta-analysis Frontiers in cellular and infection microbiology · 2020 Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation. Zhou J, Zhang Y, Cui P, et al. Bacteroides caccaeBacteroides ovatusBacteroides uniformis PubMed ↗
Review Frontiers in immunology · 2020 The Bacterium Akkermansia muciniphila: A Sentinel for Gut Permeability and Its Relevance to HIV-Related Inflammation. Ouyang J, Lin J, Isnard S, et al. Akkermansia muciniphila PubMed ↗
Observational AIDS · 2019 Distinct gut microbiota profile in antiretroviral therapy-treated perinatally HIV-infected patients associated with cardiac and inflammatory biomarkers. Sessa L, Reddel S, Manno E, et al. Akkermansia muciniphila PubMed ↗
Observational BMC infectious diseases · 2019 Alterations in bacterial communities, SCFA and biomarkers in an elderly HIV-positive and HIV-negative population in western Mexico. González-Hernández LA, Ruiz-Briseño MDR, Sánchez-Reyes K, et al. [Clostridium] leptum PubMed ↗
Observational Mucosal immunology · 2018 Low nadir CD4+ T-cell counts predict gut dysbiosis in HIV-1 infection. Guillén Y, Noguera-Julian M, Rivera J, et al. Roseburia intestinalis PubMed ↗
Observational AIDS research and human retroviruses · 2018 Oral Microbiome in HIV-Infected Women: Shifts in the Abundance of Pathogenic and Beneficial Bacteria Are Associated with Aging, HIV Load, CD4 Count, and Antiretroviral Therapy. Lewy T, Hong BY, Weiser B, et al. Veillonella parvula PubMed ↗
Randomized trial Pediatric research · 2018 Predictors of mortality among hospitalized children with severe acute malnutrition: a prospective study from Uganda. Nabukeera-Barungi N, Grenov B, Lanyero B, et al. Bifidobacterium animalis PubMed ↗
Randomized trial Journal of the International AIDS Society · 2017 Cotrimoxazole prophylaxis was associated with enteric commensal bacterial resistance among HIV-exposed infants in a randomized controlled trial, Botswana. Powis KM, Souda S, Lockman S, et al. Escherichia coli PubMed ↗
Observational AIDS · 2017 Low abundance of colonic butyrate-producing bacteria in HIV infection is associated with microbial translocation and immune activation. Dillon SM, Kibbie J, Lee EJ, et al. Roseburia intestinalis PubMed ↗