Interactions › [Clostridium] scindens

[Clostridium] scindens: its interactions

Everything we hold for this microbe: the microbes it lives with, the metabolites it eats and makes, life factors and health. Click any dot to centre the map on it.

Microbes 20

  • Bifidobacterium bifidum
    Microbes Recorded only Recorded as making the chenodeoxycholic acid, cholic acid and vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Bifidobacterium breve
    Microbes Recorded only Recorded as making the chenodeoxycholic acid, cholic acid and vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Bifidobacterium longum
    Microbes Recorded only Recorded as making the chenodeoxycholic acid, cholic acid and vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Bacteroides fragilis
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Bifidobacterium adolescentis
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Bifidobacterium animalis
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Clostridium perfringens
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Lactiplantibacillus plantarum
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Lactobacillus acidophilus
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Lactobacillus gasseri
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Lactobacillus johnsonii
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Lentilactobacillus buchneri
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Listeria monocytogenes
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Phocaeicola vulgatus
    Microbes Recorded only Recorded as making the chenodeoxycholic acid and cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Blautia producta
    Microbes Recorded only Recorded as making the cholic acid C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Escherichia coli
    Microbes Recorded only Recorded as making the vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Klebsiella pneumoniae
    Microbes Recorded only Recorded as making the vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Limosilactobacillus reuteri
    Microbes Recorded only Recorded as making the vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Listeria innocua
    Microbes Recorded only Recorded as making the vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map
  • Mycolicibacterium smegmatis
    Microbes Recorded only Recorded as making the vitamin b12 C. scindens uses. Records show both handle the same compound, not that one feeds the other in a gut. NJC19 records Oct 2026
    Open its map

Metabolites 17

  • Chenodeoxycholic acid
    Metabolites · Eats Recorded only Papers say yes NJC19 records NJC19 ref 119NJC19 ref 203NJC19 ref 92NJC19 ref 94 Oct 2026
    Open its map
  • Cholic acid
    Metabolites · Eats Recorded only Papers say yes NJC19 records NJC19 ref 119NJC19 ref 203NJC19 ref 92NJC19 ref 94 Oct 2026
    Open its map
  • Deoxycholic acid
    Metabolites · Makes Recorded only Papers say yes NJC19 records NJC19 ref 119NJC19 ref 203NJC19 ref 92NJC19 ref 94 Oct 2026
    Open its map
  • Lithocholic acid
    Metabolites · Makes Recorded only Papers say yes NJC19 records NJC19 ref 119NJC19 ref 203NJC19 ref 92NJC19 ref 94 Oct 2026
    Open its map
  • 4-Hydroxyproline
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Genome analysis (AGORA2) Oct 2026
    Open its map
  • Ammonia
    Metabolites · Makes From genomes (AGORA2) 1 of 1 strain Genome analysis (AGORA2) Oct 2026
    Open its map
  • D-ribose
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Made or used by most gut microbes we hold (49 species), so it doesn't link microbes on its own. Genome analysis (AGORA2) Oct 2026
    Open its map
  • Deoxycholate
    Metabolites · Makes From genomes (AGORA2) 1 of 1 strain Genome analysis (AGORA2) Oct 2026
    Open its map
  • Fructose
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Made or used by most gut microbes we hold (79 species), so it doesn't link microbes on its own. Genome analysis (AGORA2) Oct 2026
    Open its map
  • Glucose
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Made or used by most gut microbes we hold (152 species), so it doesn't link microbes on its own. Genome analysis (AGORA2) Oct 2026
    Open its map
  • Lactose
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Made or used by most gut microbes we hold (92 species), so it doesn't link microbes on its own. Genome analysis (AGORA2) Oct 2026
    Open its map
  • Lithocholate
    Metabolites · Makes From genomes (AGORA2) 1 of 1 strain Genome analysis (AGORA2) Oct 2026
    Open its map
  • Mannose
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Made or used by most gut microbes we hold (87 species), so it doesn't link microbes on its own. Genome analysis (AGORA2) Oct 2026
    Open its map
  • Nitrate
    Metabolites · Eats Recorded only 1 of 2 strains BacDive lab tests
    Open its map
  • Pyruvate
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Genome analysis (AGORA2) Oct 2026
    Open its map
  • Vitamin B12
    Metabolites · Eats Recorded only Papers say yes NJC19 records NJC19 ref 97 Oct 2026
    Open its map
  • Xylose
    Metabolites · Eats From genomes (AGORA2) 1 of 1 strain Made or used by most gut microbes we hold (55 species), so it doesn't link microbes on its own. Genome analysis (AGORA2) Oct 2026
    Open its map
5 metabolites it can't eat Genome analysis (AGORA2)
Inulin Its genomes can't eat it· 0 of 1 genome
Resistant starch Its genomes can't eat it· 0 of 1 genome
Starch Its genomes can't eat it· 0 of 1 genome
Pectin Its genomes can't eat it· 0 of 1 genome
Gut mucus Its genomes can't eat it· 0 of 1 genome
Nothing found isn't proof of no link: a study can miss a small difference.
21 metabolites it can't make Genome analysis (AGORA2)
Butyrate Its genomes can't make it· 0 of 1 genome
Propionate Its genomes can't make it· 0 of 1 genome
Lactic acid Its genomes can't make it· 0 of 1 genome
Succinate Its genomes can't make it· 0 of 1 genome
Formate Its genomes can't make it· 0 of 1 genome
Thiamin Its genomes can't make it· 0 of 1 genome
and 15 more Nothing found isn't proof of no link: a study can miss a small difference.

Life factors 1

  • ↓ Coffee
    Life factors · Food and diet Shown in a study Lower in people who drink more coffee A noteworthy study Manghi 2024
    Open its map
3 diets compared, nothing found Studies whose tables list every microbe they tested
Omnivore Compared, no clear difference· Fackelmann 2025
Vegan Compared, no clear difference· Fackelmann 2025
Vegetarian Compared, no clear difference· Fackelmann 2025
Nothing found isn't proof of no link: a study can miss a small difference.

Health 6

  • ↑ Chronic fatigue syndrome
    Health · Condition Compared within datasets · Seen again and again More common in people with it GMrepo, compared within datasets PRJNA379741PRJNA751448PRJNA878603 Oct 2026
    Open its map
  • ↑ Chronic kidney failure
    Health · Condition Compared within datasets · Seen more than once More common in people with it GMrepo, compared within datasets PRJEB65297PRJNA449784 Oct 2026
    Open its map
  • ↑ Multiple sclerosis
    Health · Condition Compared within datasets · Seen more than once More common in people with it GMrepo, compared within datasets PRJEB28543PRJNA1022308 Oct 2026
    Open its map
  • ↓ Clostridium infections
    Health · Condition Compared within datasets · Seen once Less common in people with it GMrepo, compared within datasets PRJNA648321 Oct 2026
    Open its map
  • ↑ High blood pressure
    Health · Condition Compared within datasets · Seen once More common in people with it GMrepo, compared within datasets PRJNA509999 Oct 2026
    Open its map
  • ↑ Obesity
    Health · Condition Compared within datasets · Seen once More common in people with it GMrepo, compared within datasets PRJNA1125836 Oct 2026
    Open its map
38 conditions compared, nothing found Our analysis of GMrepo data
Colorectal cancer Compared, no clear difference· 10 studies
Crohn's disease Compared, no clear difference· 8 studies
Ulcerative colitis Compared, no clear difference· 7 studies
Parkinson's disease Compared, no clear difference· 6 studies
COVID-19 Compared, no clear difference· 3 studies
Autism spectrum disorder Compared, no clear difference· 2 studies
and 32 more Nothing found isn't proof of no link: a study can miss a small difference.

+4 more recorded (releases what it uses)