Named species · GMrepo v3 · NCBI lineage

Microbes

132 species

Most studiedMost common in healthy guts

Species	Healthy guts	Samples ↓	Products
Bacteroides uniformis Bacteroidota · Bacteroidaceae	87%	20,417	0
Phocaeicola vulgatus Bacteroidota · Bacteroidaceae	82%	19,640	0
Parabacteroides distasonis Bacteroidota · Tannerellaceae	80%	18,684	0
Bacteroides ovatus Bacteroidota · Bacteroidaceae	76%	17,825	0
Bacteroides thetaiotaomicron Bacteroidota · Bacteroidaceae	69%	16,618	0
Roseburia inulinivorans Bacillota · Lachnospiraceae	70%	15,651	0
Alistipes putredinis Bacteroidota · Rikenellaceae	70%	15,443	0
Parabacteroides merdae Bacteroidota · Tannerellaceae	62%	14,115	0
Odoribacter splanchnicus Bacteroidota · Odoribacteraceae	66%	14,098	0
Bacteroides caccae Bacteroidota · Bacteroidaceae	62%	14,078	0
Coprococcus comes Bacillota · Lachnospiraceae	63%	13,826	0
Bacteroides xylanisolvens Bacteroidota · Bacteroidaceae	59%	13,732	0
Anaerobutyricum hallii Bacillota · Lachnospiraceae	61%	13,491	2
Phocaeicola dorei Bacteroidota · Bacteroidaceae	54%	12,489	0
Bacteroides stercoris Bacteroidota · Bacteroidaceae	50%	12,071	0
Bacteroides fragilis Bacteroidota · Bacteroidaceae	44%	11,390	0
Coprococcus catus Bacillota · Lachnospiraceae	51%	11,375	0
Phascolarctobacterium faecium Bacillota · Acidaminococcaceae	40%	10,122	0
Anaerobutyricum soehngenii Bacillota · Lachnospiraceae	42%	9,574	0
Akkermansia muciniphila Verrucomicrobiota · Akkermansiaceae	43%	9,381	12
Segatella copri Bacteroidota · Prevotellaceae	39%	8,908	0
Bacteroides cellulosilyticus Bacteroidota · Bacteroidaceae	35%	8,805	0
Veillonella parvula Bacillota · Veillonellaceae	29%	7,931	0
Phocaeicola massiliensis Bacteroidota · Bacteroidaceae	34%	7,748	0
Coprococcus eutactus Bacillota · Lachnospiraceae	39%	7,725	0
Dialister invisus Bacillota · Veillonellaceae	33%	7,524	0
Bacteroides finegoldii Bacteroidota · Bacteroidaceae	27%	6,205	0
Phocaeicola plebeius Bacteroidota · Bacteroidaceae	25%	6,067	0
Veillonella dispar Bacillota · Veillonellaceae	22%	5,838	0
Bacteroides eggerthii Bacteroidota · Bacteroidaceae	24%	5,593	0
Butyricimonas virosa Bacteroidota · Odoribacteraceae	23%	5,555	0
Bacteroides nordii Bacteroidota · Bacteroidaceae	21%	5,434	0
Bacteroides intestinalis Bacteroidota · Bacteroidaceae	21%	5,257	0
Veillonella atypica Bacillota · Veillonellaceae	18%	5,226	0
Phocaeicola coprocola Bacteroidota · Bacteroidaceae	19%	4,676	0
Parabacteroides goldsteinii Bacteroidota · Tannerellaceae	18%	4,504	0
Bacteroides salyersiae Bacteroidota · Bacteroidaceae	18%	4,433	0
Coprobacter fastidiosus Bacteroidota · Barnesiellaceae	21%	4,432	0
Megamonas funiformis Bacillota · Selenomonadaceae	17%	4,235	0
Bacteroides faecis Bacteroidota · Bacteroidaceae	17%	3,706	0
Bacteroides clarus Bacteroidota · Bacteroidaceae	15%	3,529	0
Phascolarctobacterium succinatutens Bacillota · Acidaminococcaceae	15%	3,200	0
Leyella stercorea Bacteroidota · Prevotellaceae	13%	3,175	0
Candidatus Borkfalkia ceftriaxoniphila Bacillota · Christensenellaceae	13%	2,676	0
Parabacteroides johnsonii Bacteroidota · Tannerellaceae	10%	2,353	0
Clostridium perfringens Bacillota · Clostridiaceae	5.9%	1,710	0
Anaerotignum lactatifermentans Bacillota · Anaerotignaceae	6.1%	1,638	0
[Clostridium] methylpentosum Bacillota · Oscillospiraceae	5.5%	1,610	0
Phocaeicola coprophilus Bacteroidota · Bacteroidaceae	6.0%	1,462	0
Fusobacterium mortiferum Fusobacteriota · Fusobacteriaceae	5.4%	1,449	0
Butyricimonas synergistica Bacteroidota · Odoribacteraceae	5.0%	1,366	0
Phocaeicola sartorii Bacteroidota · Bacteroidaceae	4.5%	1,335	0
Fusobacterium nucleatum Fusobacteriota · Fusobacteriaceae	2.0%	1,048	0
Clostridium paraputrificum Bacillota · Clostridiaceae	3.6%	1,002	0
Fusobacterium ulcerans Fusobacteriota · Fusobacteriaceae	3.0%	885	0
Pyramidobacter piscolens Synergistota · Dethiosulfovibrionaceae	2.7%	796	0
Dialister pneumosintes Bacillota · Veillonellaceae	<1%	783	0
Corynebacterium durum Actinomycetota · Corynebacteriaceae	2.8%	766	0
Prevotella disiens Bacteroidota · Prevotellaceae	2.3%	598	0
Megasphaera elsdenii Bacillota · Veillonellaceae	2.7%	587	0
Fusobacterium varium Fusobacteriota · Fusobacteriaceae	1.2%	553	0
Dialister succinatiphilus Bacillota · Veillonellaceae	2.6%	550	0
[Clostridium] hylemonae Bacillota · Lachnospiraceae	1.8%	504	0
[Bacteroides] pectinophilus Bacillota	2.0%	450	0
Propionibacterium acidifaciens Actinomycetota · Propionibacteriaceae	1.2%	427	0
Porphyromonas uenonis Bacteroidota · Porphyromonadaceae	1.2%	411	0
Fusobacterium periodonticum Fusobacteriota · Fusobacteriaceae	<1%	388	0
Porphyromonas somerae Bacteroidota · Porphyromonadaceae	1.0%	363	0
Propionibacterium freudenreichii Actinomycetota · Propionibacteriaceae	1.1%	303	8
Porphyromonas asaccharolytica Bacteroidota · Porphyromonadaceae	<1%	290	0
Anaeroglobus geminatus Bacillota · Veillonellaceae	<1%	285	0
Cutibacterium acnes Actinomycetota · Propionibacteriaceae	1.1%	267	0
Bacteroides fluxus Bacteroidota · Bacteroidaceae	<1%	256	0
Prevotella intermedia Bacteroidota · Prevotellaceae	<1%	222	0
Arachnia propionica Actinomycetota · Propionibacteriaceae	<1%	188	0
Veillonella seminalis Bacillota · Veillonellaceae	<1%	184	0
Fusobacterium gonidiaformans Fusobacteriota · Fusobacteriaceae	<1%	180	0
Bacteroides oleiciplenus Bacteroidota · Bacteroidaceae	<1%	172	0
Parabacteroides chinchillae Bacteroidota · Tannerellaceae	<1%	162	0
Corynebacterium amycolatum Actinomycetota · Corynebacteriaceae	<1%	135	0
Dialister micraerophilus Bacillota · Veillonellaceae	<1%	133	0
Peptacetobacter hiranonis Bacillota · Peptostreptococcaceae	<1%	118	0
Phocaeicola barnesiae Bacteroidota · Bacteroidaceae	<1%	107	0
Clostridium cadaveris Bacillota · Clostridiaceae	<1%	105	0
Porphyromonas endodontalis Bacteroidota · Porphyromonadaceae	<1%	103	0
Bacteroides gallinarum Bacteroidota · Bacteroidaceae	<1%	102	0
Clostridium baratii Bacillota · Clostridiaceae	<1%	101	0
Cutibacterium avidum Actinomycetota · Propionibacteriaceae	<1%	96	0
Veillonella denticariosi Bacillota · Veillonellaceae	<1%	88	0
Cetobacterium somerae Fusobacteriota · Fusobacteriaceae	<1%	87	0
Salmonella enterica Pseudomonadota · Enterobacteriaceae	<1%	83	0
Paraclostridium bifermentans Bacillota · Peptostreptococcaceae	<1%	67	0
Paraclostridium sordellii Bacillota · Peptostreptococcaceae	<1%	67	0
Veillonella magna Bacillota · Veillonellaceae	<1%	57	0
Rikenella microfusus Bacteroidota · Rikenellaceae	<1%	52	0
Porphyromonas gingivalis Bacteroidota · Porphyromonadaceae	<1%	49	0
Selenomonas noxia Bacillota · Selenomonadaceae	<1%	46	0
Fusobacterium perfoetens Fusobacteriota · Fusobacteriaceae	<1%	43	0
Segatella salivae Bacteroidota · Prevotellaceae	<1%	43	0
Selenomonas bovis Bacillota · Selenomonadaceae	<1%	39	0
Cutibacterium granulosum Actinomycetota · Propionibacteriaceae	<1%	34	0
Faecalispora sporosphaeroides Bacillota · Oscillospiraceae	<1%	27	0
Fusobacterium necrophorum Fusobacteriota · Fusobacteriaceae	<1%	24	0
Jonquetella anthropi Synergistota · Dethiosulfovibrionaceae	<1%	24	0
Anaerococcus hydrogenalis Bacillota · Peptoniphilaceae	<1%	18	0
Treponema vincentii Spirochaetota · Treponemataceae	0%	15	0
Treponema denticola Spirochaetota · Treponemataceae	0%	13	0
Acidipropionibacterium acidipropionici Actinomycetota · Propionibacteriaceae	<1%	12	0
Alcaligenes faecalis Pseudomonadota · Alcaligenaceae	<1%	12	0
Bacteroides graminisolvens Bacteroidota · Bacteroidaceae	<1%	11	0
Bacteroides pyogenes Bacteroidota · Bacteroidaceae	<1%	11	0
Selenomonas infelix Bacillota · Selenomonadaceae	0%	11	0
Anaerobiospirillum succiniciproducens Pseudomonadota · Succinivibrionaceae	<1%	10	0
Clostridium sporogenes Bacillota · Clostridiaceae	<1%	10	0
Selenomonas flueggei Bacillota · Selenomonadaceae	0%	10	0
Tannerella forsythia Bacteroidota · Tannerellaceae	<1%	10	0
Terrisporobacter glycolicus Bacillota · Peptostreptococcaceae	<1%	10	0
Bacteroides neonati Bacteroidota · Bacteroidaceae	<1%	8	0
Lacrimispora xylanisolvens Bacillota · Lachnospiraceae	<1%	8	0
Metaclostridioides mangenotii Bacillota · Peptostreptococcaceae	<1%	6	0
Veillonella montpellierensis Bacillota · Veillonellaceae	<1%	6	0
Centipeda periodontii Bacillota · Selenomonadaceae	0%	4	0
Bacteroides caecimuris Bacteroidota · Bacteroidaceae	<1%	3	0
Fusobacterium massiliense Fusobacteriota · Fusobacteriaceae	<1%	3	0
Megamonas hypermegale Bacillota · Selenomonadaceae	<1%	3	0
Acidipropionibacterium jensenii Actinomycetota · Propionibacteriaceae	<1%	2	0
Bacteroides timonensis Bacteroidota · Bacteroidaceae	0%	2	0
Fusobacterium necrogenes Fusobacteriota · Fusobacteriaceae	0%	2	0
Schwartzia succinivorans Bacillota · Selenomonadaceae	<1%	2	0
Acetatifactor muris Bacillota · Lachnospiraceae	0%	1	0
Bacteroides coprosuis Bacteroidota · Bacteroidaceae	0%	1	0
Clostridium sulfidigenes Bacillota · Clostridiaceae	0%	1	0

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