Named species · GMrepo v3 · NCBI lineage

Microbes

118 species

Most studiedMost common in healthy guts

Species	Healthy guts	Samples ↓	Products
Faecalibacterium prausnitzii Bacillota · Oscillospiraceae	90%	20,688	0
Anaerostipes hadrus Bacillota · Lachnospiraceae	78%	17,950	0
Agathobacter rectalis Bacillota · Lachnospiraceae	79%	17,543	0
Flavonifractor plautii Bacillota · Oscillospiraceae	70%	17,023	0
Roseburia inulinivorans Bacillota · Lachnospiraceae	70%	15,651	0
Oscillibacter valericigenes Bacillota · Oscillospiraceae	70%	14,988	0
Gemmiger formicilis Bacillota · Oscillospiraceae	71%	14,882	0
Roseburia faecis Bacillota · Lachnospiraceae	68%	14,837	0
Odoribacter splanchnicus Bacteroidota · Odoribacteraceae	66%	14,098	0
Roseburia hominis Bacillota · Lachnospiraceae	64%	13,947	0
Coprococcus comes Bacillota · Lachnospiraceae	63%	13,826	0
Anaerobutyricum hallii Bacillota · Lachnospiraceae	61%	13,491	2
Roseburia intestinalis Bacillota · Lachnospiraceae	53%	11,670	0
Coprococcus catus Bacillota · Lachnospiraceae	51%	11,375	0
Eubacterium ramulus Bacillota · Eubacteriaceae	51%	11,330	0
Eubacterium ventriosum Bacillota · Eubacteriaceae	47%	9,921	0
Anaerobutyricum soehngenii Bacillota · Lachnospiraceae	42%	9,574	0
[Clostridium] innocuum Bacillota · Clostridiaceae	32%	8,645	0
Coprococcus eutactus Bacillota · Lachnospiraceae	39%	7,725	0
[Eubacterium] siraeum Bacillota · Oscillospiraceae	37%	7,704	0
[Clostridium] symbiosum Bacillota · Lachnospiraceae	24%	7,190	0
Intestinimonas butyriciproducens Bacillota	30%	6,759	0
Anaerotruncus colihominis Bacillota · Oscillospiraceae	25%	6,169	0
Butyricimonas virosa Bacteroidota · Odoribacteraceae	23%	5,555	0
Anaerostipes caccae Bacillota · Lachnospiraceae	12%	2,997	0
Coprobacillus cateniformis Bacillota · Coprobacillaceae	11%	2,745	0
Acidaminococcus intestini Bacillota · Acidaminococcaceae	11%	2,525	0
Christensenella minuta Bacillota · Christensenellaceae	10%	2,360	0
Holdemanella biformis Bacillota · Erysipelotrichaceae	9.9%	2,224	0
Anaerofustis stercorihominis Bacillota · Eubacteriaceae	10.0%	2,065	0
[Eubacterium] sulci Bacillota · Anaerovoracaceae	8.0%	1,857	0
Clostridium perfringens Bacillota · Clostridiaceae	5.9%	1,710	0
Anaerotignum lactatifermentans Bacillota · Anaerotignaceae	6.1%	1,638	0
Fusobacterium mortiferum Fusobacteriota · Fusobacteriaceae	5.4%	1,449	0
Butyricimonas synergistica Bacteroidota · Odoribacteraceae	5.0%	1,366	0
Megasphaera micronuciformis Bacillota · Veillonellaceae	3.6%	1,362	0
Amedibacillus dolichus Bacillota · Erysipelotrichaceae	5.1%	1,329	0
Eshraghiella crossota Bacillota · Lachnospiraceae	6.1%	1,193	0
Fusobacterium nucleatum Fusobacteriota · Fusobacteriaceae	2.0%	1,048	0
Faecalitalea cylindroides Bacillota · Erysipelotrichaceae	4.2%	1,023	0
Clostridium paraputrificum Bacillota · Clostridiaceae	3.6%	1,002	0
Fusobacterium ulcerans Fusobacteriota · Fusobacteriaceae	3.0%	885	0
Peptostreptococcus stomatis Bacillota · Peptostreptococcaceae	1.6%	801	0
Finegoldia magna Bacillota · Peptoniphilaceae	1.9%	733	0
Anaerococcus obesiensis Bacillota · Peptoniphilaceae	1.7%	688	0
Clostridioides difficile Bacillota · Peptostreptococcaceae	1.6%	668	0
Catenibacterium mitsuokai Bacillota · Coprobacillaceae	3.0%	649	0
Solobacterium moorei Bacillota · Erysipelotrichaceae	1.7%	620	0
Megasphaera elsdenii Bacillota · Veillonellaceae	2.7%	587	0
Anaerovorax odorimutans Bacillota · Anaerovoracaceae	2.1%	555	0
Fusobacterium varium Fusobacteriota · Fusobacteriaceae	1.2%	553	0
Clostridium celatum Bacillota · Clostridiaceae	2.1%	520	0
[Clostridium] hylemonae Bacillota · Lachnospiraceae	1.8%	504	0
Acidaminococcus massiliensis Bacillota · Acidaminococcaceae	2.0%	490	0
Peptostreptococcus anaerobius Bacillota · Peptostreptococcaceae	1.2%	450	0
Eubacterium limosum Bacillota · Eubacteriaceae	1.6%	449	0
Propionibacterium acidifaciens Actinomycetota · Propionibacteriaceae	1.2%	427	0
Peptoniphilus lacrimalis Bacillota · Peptoniphilaceae	1.2%	423	0
Porphyromonas uenonis Bacteroidota · Porphyromonadaceae	1.2%	411	0
Clostridium disporicum Bacillota · Clostridiaceae	1.7%	400	0
Peptoniphilus harei Bacillota · Peptoniphilaceae	<1%	390	0
Fusobacterium periodonticum Fusobacteriota · Fusobacteriaceae	<1%	388	0
Clostridium butyricum Bacillota · Clostridiaceae	1.1%	386	7
[Eubacterium] brachy Bacillota · Anaerovoracaceae	1.5%	375	0
Christensenella timonensis Bacillota · Christensenellaceae	1.5%	365	0
Porphyromonas somerae Bacteroidota · Porphyromonadaceae	1.0%	363	0
Acidaminococcus fermentans Bacillota · Acidaminococcaceae	1.5%	343	0
Clostridium tertium Bacillota · Clostridiaceae	1.3%	313	0
Peptoniphilus grossensis Bacillota · Peptoniphilaceae	<1%	297	0
Porphyromonas asaccharolytica Bacteroidota · Porphyromonadaceae	<1%	290	0
Anaeroglobus geminatus Bacillota · Veillonellaceae	<1%	285	0
[Eubacterium] infirmum Bacillota · Anaerovoracaceae	<1%	211	0
Fusobacterium gonidiaformans Fusobacteriota · Fusobacteriaceae	<1%	180	0
Peptoniphilus duerdenii Bacillota · Peptoniphilaceae	<1%	146	0
Anaerococcus prevotii Bacillota · Peptoniphilaceae	<1%	134	0
Anaerococcus senegalensis Bacillota · Peptoniphilaceae	<1%	124	0
Oscillibacter ruminantium Bacillota · Oscillospiraceae	<1%	121	0
Aedoeadaptatus coxii Bacillota · Peptoniphilaceae	<1%	119	0
Peptoniphilus phoceensis Bacillota · Peptoniphilaceae	<1%	113	0
[Eubacterium] saphenum Bacillota · Anaerovoracaceae	<1%	111	0
Peptoniphilus senegalensis Bacillota · Peptoniphilaceae	<1%	106	0
Clostridium cadaveris Bacillota · Clostridiaceae	<1%	105	0
Lachnoanaerobaculum orale Bacillota · Lachnospiraceae	<1%	105	0
Peptoniphilus obesi Bacillota · Peptoniphilaceae	<1%	103	0
Porphyromonas endodontalis Bacteroidota · Porphyromonadaceae	<1%	103	0
Anaerococcus lactolyticus Bacillota · Peptoniphilaceae	<1%	102	0
Clostridium baratii Bacillota · Clostridiaceae	<1%	101	0
Agathobaculum desmolans Bacillota · Butyricicoccaceae	<1%	91	0
Cetobacterium somerae Fusobacteriota · Fusobacteriaceae	<1%	87	0
Brachyspira pilosicoli Spirochaetota · Brachyspiraceae	<1%	86	0
Pseudoramibacter alactolyticus Bacillota · Eubacteriaceae	<1%	86	0
Shuttleworthella satelles Bacillota · Lachnospiraceae	<1%	82	0
Paraclostridium sordellii Bacillota · Peptostreptococcaceae	<1%	67	0
Synergistes jonesii Synergistota · Synergistaceae	<1%	50	0
Porphyromonas gingivalis Bacteroidota · Porphyromonadaceae	<1%	49	0
Filifactor alocis Bacillota · Filifactoraceae	<1%	48	0
Fusobacterium perfoetens Fusobacteriota · Fusobacteriaceae	<1%	43	0
Anaerococcus tetradius Bacillota · Peptoniphilaceae	<1%	29	0
Anaerococcus vaginalis Bacillota · Peptoniphilaceae	<1%	27	0
Faecalispora sporosphaeroides Bacillota · Oscillospiraceae	<1%	27	0

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