Acetobacteraceae · Research

Insects · 2025

Deciphering the Microbiota of Edible Insects Sold by Street Vendors in Thailand Using Metataxonomic Analysis.

Rampanti G, Cardinali F, Ferrocino I, et al.

Streptococcus thermophilus

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Antonie van Leeuwenhoek · 2024

Phocaeicola acetigenes sp. nov., producing acetic acid and iso-butyric acid, isolated faeces from a healthy human.

Do HE, Ha YB, Kim JS, et al.

Phocaeicola plebeius

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International journal of systematic and evolutionary microbiology · 2026

Acidaminobacterium chupaoyuni gen. nov., sp. nov., a novel member of the family Oscillospiraceae isolated from pit clay for strong aroma-type liquor production.

Liu Y, Zhou Q, Li A, et al.

Intestinimonas butyriciproducens

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Animal study PLoS biology · 2017

Commensal bacteria and essential amino acids control food choice behavior and reproduction.

Leitão-Gonçalves R, Carvalho-Santos Z, Francisco AP, et al.

Enterococcus faecalis

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Environmental microbiology · 2022

A functional Wood-Ljungdahl pathway devoid of a formate dehydrogenase in the gut acetogens Blautia wexlerae, Blautia luti and beyond.

Trischler R, Roth J, Sorbara MT, et al.

Blautia wexlerae

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Systematic and applied microbiology · 2021

Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov.

Zou Y, Xue W, Lin X, et al.

Roseburia intestinalis

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International journal of systematic and evolutionary microbiology · 2022

Pararoseburia lenta gen. nov., sp. nov. isolated from human faeces.

Abdugheni R, Wang YJ, Li DH, et al.

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Systematic and applied microbiology · 2026

Identification and characterization of four novel gut bacterial taxa: Alvibacillus kangbaii gen. nov., sp. nov., Jutongia huiwenae sp. nov., Flintibacter aciditolerans sp. nov., and Dizhoua hominis gen. nov., sp. nov. isolated from human feces.

Zhao AQ, Jiang H, Yan Y, et al.

Anaeromassilibacillus senegalensis

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Journal of the science of food and agriculture · 2025

Elucidation of the pathway for Dictyophora indusiata polysaccharide-regulated differential acetic acid production by Bifidobacterium longum F2.

Zeng Z, Wang L, Zhang W, et al.

Bifidobacterium longum

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International journal of systematic and evolutionary microbiology · 2019

Parabacteroides acidifaciens sp. nov., isolated from human faeces.

Wang YJ, Xu XJ, Zhou N, et al.

Parabacteroides distasonis

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Gene · 2021

Comparative genomics and in silico gene evaluation involved in the probiotic potential of Bifidobacterium longum 51A.

da Silva JGV, Vieira AT, Sousa TJ, et al.

Bifidobacterium longum

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PeerJ · 2020

Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces.

Ghimire S, Wongkuna S, Scaria J

[Clostridium] innocuum

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Animal study Microbiology spectrum · 2022

Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca.

Kralova S, Davidova-Gerzova L, Valcek A, et al.

Bacteroides fragilis

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New microbes and new infections · 2017

Genome sequence and description of Anaeromassilibacillus senegalensis gen. nov., sp. nov., isolated from the gut of patient with kwashiorkor.

Guilhot E, Alou MT, Lagier JC, et al.

Anaeromassilibacillus senegalensis

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International journal of systematic and evolutionary microbiology · 2024

Anaerolentibacter hominis gen. nov. sp. nov., Diplocloster hominis sp. nov. and Pilosibacter fragilis gen. nov. sp. nov., isolated from human faeces.

Yan Y, Zhao QH, Xu C, et al.

Clostridium fessum

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mSphere · 2020

Acinetobacter baumannii NCIMB8209: a Rare Environmental Strain Displaying Extensive Insertion Sequence-Mediated Genome Remodeling Resulting in the Loss of Exposed Cell Structures and Defensive Mechanisms.

Repizo GD, Espariz M, Seravalle JL, et al.

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bioRxiv · 2026

A widespread gut bacterial lineage distinguished by redox metabolism and phage defense.

Noecker C, Guo L, Daté C, et al.

Eggerthella lenta

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International journal of systematic and evolutionary microbiology · 2023

Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces.

Abdugheni R, Li DH, Wang YJ, et al.

Merdimmobilis hominis

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Microbiology spectrum · 2025

Structure of the Enterobacter pan-genome is revealed using machine learning.

Burrows JT, Li G, Monk JM, et al.

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International journal of systematic and evolutionary microbiology · 2021

Blautia intestinalis sp. nov., isolated from human feces.

Wang YJ, Abdugheni R, Liu C, et al.

Blautia obeum

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Observational Minerva cardiology and angiology · 2025

Gut microbiota diversity and composition in patients with atherosclerosis analyzed using full-length 16S rRNA gene sequencing.

Guo SK, Xu Y, Dai ST, et al.

Escherichia coli

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Animal study Antonie van Leeuwenhoek · 2020

Lactococcus protaetiae sp. nov. and Xylanimonas protaetiae sp. nov., isolated from gut of larvae of Protaetia brevitarsis seulensis.

Heo J, Kim SJ, Kim MA, et al.

Lactococcus lactis

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Saudi journal of gastroenterology · 2023

Composition of the gut microbiota in patients with inflammatory bowel disease in Saudi Arabia: A pilot study.

Al-Amrah H, Saadah OI, Mosli M, et al.

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Scientific reports · 2026

Microbiome signatures of mangroves and salt marsh halophyte rhizosphere soil sediments: a metagenomic approach.

Sujeeth NK, Dharani Bommi KB, Manojkumar S, et al.

Klebsiella pneumoniae

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Journal, genetic engineering & biotechnology · 2026

Metagenomic analysis of bacterial and viral communities of Aedes aegypti and Aedes albopictus.

Nadeem SA, Ali I, Hussain H, et al.

Klebsiella pneumoniae

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Cell host & microbe · 2023

Large-scale phage cultivation for commensal human gut bacteria.

Shen J, Zhang J, Mo L, et al.

Bacteroides fragilis

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Animal study Probiotics and antimicrobial proteins · 2021

Biodiversity and Phylogenetic Relationships of Novel Bacteriocinogenic Strains Isolated from Animal's Droppings at the Zoological Garden of Lille, France.

Eveno M, Salouhi A, Belguesmia Y, et al.

Enterococcus faecalis

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Animal study BMC genomics · 2018

Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures.

Medvecky M, Cejkova D, Polansky O, et al.

Bacteroides ovatus

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International journal of systematic and evolutionary microbiology · 2020

Prevotella hominis sp. nov., isolated from human faeces.

Liou JS, Huang CH, Ikeyama N, et al.

Segatella copri

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Animal study Scientific reports · 2024

Anaerobic flora, Selenomonas ruminis sp. nov., and the bacteriocinogenic Ligilactobacillus salivarius strain MP3 from crossbred-lactating goats.

Poothong S, Tanasupawat S, Chanpongsang S, et al.

Ligilactobacillus salivarius

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Animal study Systematic and applied microbiology · 2021

Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov.

Lugli GA, Calvete-Torre I, Alessandri G, et al.

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Observational APMIS · 2026

A Survey of the Microbiome, Culturome and ARG Profile of a Cohort of Chronic Diabetic Foot Lesions.

Pyrzanowska KI, Smith EN, Ramalingam C, et al.

Enterococcus faecalis

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Review Surgical infections · 2025

Acute Appendicitis and the Microbiome: A Review of Microbial Signatures.

Karikis I, Arda Y, Sanyal R, et al.

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Animal study International journal of systematic and evolutionary microbiology · 2020

Characterization of the phylogenetic diversity of two novel species belonging to the genus Bifidobacterium: Bifidobacterium cebidarum sp. nov. and Bifidobacterium leontopitheci sp. nov.

Duranti S, Lugli GA, Viappiani A, et al.

Bifidobacterium bifidum

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Microbiology resource announcements · 2019

Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.

Ogata Y, Suda W, Ikeyama N, et al.

Phascolarctobacterium faecium

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Applied microbiology and biotechnology · 2026

Synthetic consortia towards photosynthetically derived acetate for heterotrophic production of 1-butanol.

Roussou S, Lindblad P

Escherichia coli

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Review Gut microbes · 2024

Structure-dependent stimulation of gut bacteria by arabinoxylo-oligosaccharides (AXOS): a review.

Leschonski KP, Mortensen MS, Hansen LBS, et al.

Bifidobacterium longum

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Animal study Microbial pathogenesis · 2024

Isolation, genomic characterization and biotechnological evaluation of lactobacilli strains from chicken gastrointestinal tract.

Bedir E, Ay H, Kotil ES, et al.

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International journal of systematic and evolutionary microbiology · 2023

Lactobacillus isalae sp. nov., isolated from the female reproductive tract.

Eilers T, Dillen J, Ahannach S, et al.

Lactobacillus gasseri

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Review eGastroenterology · 2026

Dysosmobacter: from a serendipitous discovery to a next-generation beneficial gut commensal linked to health.

Cani PD, Petitfils C, Van Hul M

Dysosmobacter welbionis

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