Named species · GMrepo v3 · NCBI lineage

Microbes

2,435 species

Most studiedMost common in healthy guts

Species	Healthy guts	Samples ↓	Products
Faecalibacterium prausnitzii Bacillota · Oscillospiraceae	90%	20,688	0
Blautia wexlerae Bacillota · Lachnospiraceae	87%	20,683	0
Bacteroides uniformis Bacteroidota · Bacteroidaceae	87%	20,417	0
Phocaeicola vulgatus Bacteroidota · Bacteroidaceae	82%	19,640	0
Parabacteroides distasonis Bacteroidota · Tannerellaceae	80%	18,684	0
Fusicatenibacter saccharivorans Bacillota · Lachnospiraceae	81%	18,293	0
Blautia faecis Bacillota · Lachnospiraceae	77%	18,046	0
Anaerostipes hadrus Bacillota · Lachnospiraceae	78%	17,950	0
Bacteroides ovatus Bacteroidota · Bacteroidaceae	76%	17,825	0
Agathobacter rectalis Bacillota · Lachnospiraceae	79%	17,543	0
Flavonifractor plautii Bacillota · Oscillospiraceae	70%	17,023	0
Agathobaculum butyriciproducens Bacillota · Butyricicoccaceae	77%	16,899	0
Bifidobacterium longum Actinomycetota · Bifidobacteriaceae	76%	16,852	1,355
Bacteroides thetaiotaomicron Bacteroidota · Bacteroidaceae	69%	16,618	0
Dorea longicatena Bacillota · Lachnospiraceae	73%	16,441	0
Ruthenibacterium lactatiformans Bacillota · Oscillospiraceae	70%	16,277	0
Dysosmobacter welbionis Bacillota · Oscillospiraceae	72%	16,177	0
Mediterraneibacter gnavus Bacillota · Lachnospiraceae	62%	16,041	0
Roseburia inulinivorans Bacillota · Lachnospiraceae	70%	15,651	0
Blautia obeum Bacillota · Lachnospiraceae	67%	15,479	0
Alistipes putredinis Bacteroidota · Rikenellaceae	70%	15,443	0
Candidatus Cibiobacter qucibialis Bacillota	69%	15,285	0
Blautia massiliensis (ex Durand et al. 2017) Bacillota · Lachnospiraceae	68%	15,176	0
Waltera acetigignens Bacillota · Lachnospiraceae	70%	15,161	0
Oscillibacter valericigenes Bacillota · Oscillospiraceae	70%	14,988	0
Gemmiger formicilis Bacillota · Oscillospiraceae	71%	14,882	0
Dorea formicigenerans Bacillota · Lachnospiraceae	66%	14,865	0
Streptococcus salivarius Bacillota · Streptococcaceae	62%	14,842	34
Escherichia coli Pseudomonadota · Enterobacteriaceae	55%	14,839	0
Roseburia faecis Bacillota · Lachnospiraceae	68%	14,837	0
Clostridium fessum Bacillota · Clostridiaceae	68%	14,718	0
Lachnospira pectinoschiza Bacillota · Lachnospiraceae	67%	14,692	0
Bilophila wadsworthia Thermodesulfobacteriota · Desulfovibrionaceae	65%	14,411	0
Alistipes onderdonkii Bacteroidota · Rikenellaceae	63%	14,224	0
[Ruminococcus] torques Bacillota · Lachnospiraceae	58%	14,190	0
Parabacteroides merdae Bacteroidota · Tannerellaceae	62%	14,115	0
Odoribacter splanchnicus Bacteroidota · Odoribacteraceae	66%	14,098	0
Bacteroides caccae Bacteroidota · Bacteroidaceae	62%	14,078	0
Collinsella aerofaciens Actinomycetota · Coriobacteriaceae	65%	14,053	0
Ruminococcus bromii Bacillota · Oscillospiraceae	63%	14,012	0
Mediterraneibacter faecis Bacillota · Lachnospiraceae	64%	13,962	0
Roseburia hominis Bacillota · Lachnospiraceae	64%	13,947	0
Lachnospira eligens Bacillota · Lachnospiraceae	62%	13,907	0
Coprococcus comes Bacillota · Lachnospiraceae	63%	13,826	0
Bacteroides xylanisolvens Bacteroidota · Bacteroidaceae	59%	13,732	0
Alistipes shahii Bacteroidota · Rikenellaceae	63%	13,514	0
Anaerobutyricum hallii Bacillota · Lachnospiraceae	61%	13,491	2
Lacrimispora amygdalina Bacillota · Lachnospiraceae	61%	13,102	0
Gallintestinimicrobium propionicum Bacillota · Lachnospiraceae	63%	13,016	0
Phocaeicola dorei Bacteroidota · Bacteroidaceae	54%	12,489	0
Lawsonibacter asaccharolyticus Bacillota · Oscillospiraceae	58%	12,482	0
Bacteroides stercoris Bacteroidota · Bacteroidaceae	50%	12,071	0
Vescimonas coprocola Bacillota · Oscillospiraceae	55%	11,786	0
Enterocloster bolteae Bacillota · Lachnospiraceae	42%	11,709	0
Ruminococcus bicirculans (ex Wegman et al. 2014) Bacillota · Oscillospiraceae	55%	11,696	0
Roseburia intestinalis Bacillota · Lachnospiraceae	53%	11,670	0
Eggerthella lenta Actinomycetota · Eggerthellaceae	45%	11,499	0
Bacteroides fragilis Bacteroidota · Bacteroidaceae	44%	11,390	0
Coprococcus catus Bacillota · Lachnospiraceae	51%	11,375	0
Eubacterium ramulus Bacillota · Eubacteriaceae	51%	11,330	0
Blautia glucerasea Bacillota · Lachnospiraceae	49%	11,047	0
Streptococcus parasanguinis Bacillota · Streptococcaceae	44%	11,044	0
Hominenteromicrobium mulieris Bacillota · Oscillospiraceae	51%	10,732	0
Simiaoa sunii Bacillota · Lachnospiraceae	50%	10,706	0
Faecalibacillus intestinalis Bacillota · Coprobacillaceae	49%	10,685	0
Alistipes finegoldii Bacteroidota · Rikenellaceae	51%	10,646	0
Anaerotignum faecicola Bacillota · Anaerotignaceae	47%	10,407	0
Bifidobacterium adolescentis Actinomycetota · Bifidobacteriaceae	53%	10,367	13
[Clostridium] leptum Bacillota · Oscillospiraceae	47%	10,324	0
Barnesiella intestinihominis Bacteroidota · Barnesiellaceae	49%	10,270	0
Alistipes communis Bacteroidota · Rikenellaceae	51%	10,222	0
Phascolarctobacterium faecium Bacillota · Acidaminococcaceae	40%	10,122	0
Eubacterium ventriosum Bacillota · Eubacteriaceae	47%	9,921	0
Oliverpabstia intestinalis Bacillota · Lachnospiraceae	45%	9,915	0
Romboutsia timonensis Bacillota · Peptostreptococcaceae	46%	9,772	0
Anaerobutyricum soehngenii Bacillota · Lachnospiraceae	42%	9,574	0
Faecalicatena fissicatena Bacillota · Lachnospiraceae	46%	9,505	0
Parasutterella excrementihominis Pseudomonadota · Sutterellaceae	43%	9,458	0
Akkermansia muciniphila Verrucomicrobiota · Akkermansiaceae	43%	9,381	12
Enterocloster hominis (ex Liu et al. 2021) Bacillota · Lachnospiraceae	40%	9,210	0
Adlercreutzia equolifaciens Actinomycetota · Eggerthellaceae	44%	9,183	0
Fusicatenibacter faecihominis Bacillota · Lachnospiraceae	44%	9,083	0
Hydrogenoanaerobacterium saccharovorans Bacillota · Oscillospiraceae	43%	9,057	0
Evtepia gabavorous Bacillota	39%	8,928	0
Segatella copri Bacteroidota · Prevotellaceae	39%	8,908	0
Bacteroides cellulosilyticus Bacteroidota · Bacteroidaceae	35%	8,805	0
Sutterella wadsworthensis Pseudomonadota · Sutterellaceae	43%	8,653	0
[Clostridium] innocuum Bacillota · Clostridiaceae	32%	8,645	0
Intestinibacter bartlettii Bacillota · Peptostreptococcaceae	39%	8,565	0
Bifidobacterium pseudocatenulatum Actinomycetota · Bifidobacteriaceae	37%	8,523	0
Streptococcus thermophilus Bacillota · Streptococcaceae	35%	8,076	553
Lentihominibacter faecis Bacillota · Anaerovoracaceae	39%	8,024	0
Hungatella hathewayi Bacillota · Lachnospiraceae	28%	7,945	0
Veillonella parvula Bacillota · Veillonellaceae	29%	7,931	0
Phocaeicola massiliensis Bacteroidota · Bacteroidaceae	34%	7,748	0
Coprococcus eutactus Bacillota · Lachnospiraceae	39%	7,725	0
[Eubacterium] siraeum Bacillota · Oscillospiraceae	37%	7,704	0
[Ruminococcus] lactaris Bacillota · Lachnospiraceae	37%	7,661	0
Dialister invisus Bacillota · Veillonellaceae	33%	7,524	0
Alistipes indistinctus Bacteroidota · Rikenellaceae	33%	7,331	0

Showing 1–100 of 2,435 Show 50 more