Clinical trial Nature communications · 2026 Fecal microbiota transplantation for the decolonization of mucosal adherent-invasive Escherichia coli in Crohn's disease: an open-label pilot study. Xu Z, Jiang H, Huang W, et al. Escherichia coli PubMed ↗
Observational Journal of pediatric gastroenterology and nutrition · 2026 Gut microbiome in pediatric acute pancreatitis and Crohn's disease versus irritable bowel syndrome and healthy controls. Santucci NR, Dike CR, Hellmann J, et al. Mediterraneibacter gnavus PubMed ↗
Observational Gut and liver · 2026 Age-Related Microbial Differences in Newly Diagnosed Crohn's Disease Reveal the Distinct Enrichment of Oral-Associated Taxa in Pediatric Patients. Jeong YS, Kim KO, Park YE, et al. [Clostridium] innocuumMediterraneibacter gnavus PubMed ↗
Systematic review BMC gastroenterology · 2026 Specific alterations in the gut microbiome and metabolome across disease locations of Crohn's disease: a systematic review. Huang J, Chen Z, Chen M, et al. Alistipes communisFaecalibacterium prausnitzii PubMed ↗
Review Journal of bacteriology · 2026 Escherichia coli pathobionts and Crohn's disease: varied genetic paths leading to similar phenotypes. Arroyo-Mendoza M, Lorenzi H, Phillips GJ, et al. Escherichia coli PubMed ↗
Clinical trial Nature communications · 2026 Faecalibacterium prausnitzii EXL01 for the Maintenance of Steroid-induced Clinical Response or Remission in Patients with Crohn's Disease: a first in human trial. Guarino-Vignon P, Louis E, Pham HP, et al. Faecalibacterium prausnitzii PubMed ↗
Observational Inflammatory bowel diseases · 2026 Altered Gut Microbiota in Pediatric Quiescent Crohn's Disease Patients with Iron Deficiency Anemia. Gordon ES, Goc J, Grier A, et al. Alistipes shahiiAnaerobutyricum soehngenii PubMed ↗
Review Gut · 2026 Adherent-invasive Escherichia coli in Crohn's disease: the 25th anniversary. Barnich N, Arthur JC, Buisson A, et al. Escherichia coli PubMed ↗
Observational The oncologist · 2025 Machine learning identifies a distinct microbiota signature in immune checkpoint inhibitor colitis compared with inflammatory bowel disease. Barberio B, Patuzzi I, Bertin L, et al. Bifidobacterium longum PubMed ↗
Randomized trial MicrobiologyOpen · 2025 The Effects of the Crohn's Disease Exclusion Diet (CDED) Alone Versus CDED Plus Partial Enteral Nutrition (PEN) on Gut Microbiome Composition in Pediatric CD Patients. Rohani P, Ansari A, Shaygantabar M, et al. [Clostridium] leptumFaecalibacterium prausnitzii PubMed ↗
Observational BMC gastroenterology · 2025 Unveiling the diagnostic and pro-inflammatory role of crohn's disease: insights from 16 S-guided discovery and species-specific validation. Xu Y, Xie R, Weng Y, et al. Mediterraneibacter gnavus PubMed ↗
Randomized trial Gastroenterology · 2025 Whole Food Diet Induces Remission in Children and Young Adults With Mild to Moderate Crohn's Disease and Is More Tolerable Than Exclusive Enteral Nutrition: A Randomized Controlled Trial. Aharoni-Frutkoff Y, Plotkin L, Pollak D, et al. Mediterraneibacter gnavus PubMed ↗
Observational Inflammatory bowel diseases · 2025 Deep Sequencing of Crohn's Disease Lamina Propria Phagocytes Identifies Pathobionts and Correlates With Pro-Inflammatory Gene Expression. Jacobsen GE, Gonzalez EE, Mendygral P, et al. Escherichia coliMediterraneibacter gnavus PubMed ↗
Randomized trial Journal of dietary supplements · 2025 A Mushroom Based Prebiotic Supplement Pilot Study Among Patients with Crohn's Disease. Leibovitzh H, Fliss Isakov N, Werner L, et al. Parabacteroides distasonis PubMed ↗
Observational United European gastroenterology journal · 2025 Faecalibacterium Diversity in the Gut Microbiome of Crohn's Disease Patients. Mclellan P, Auger S, Goudiaby MT, et al. Faecalibacterium prausnitzii PubMed ↗
Observational Scientific reports · 2025 Fecal microbiota and genetics in pediatric-onset orofacial granulomatosis and Crohn´s disease. Höyhtyä M, Haaramo A, Nikkonen A, et al. Bifidobacterium adolescentisFaecalibacterium prausnitzii PubMed ↗
Observational Journal of Crohn's & colitis · 2025 A pro-inflammatory diet is associated with growth and virulence of Escherichia coli in pediatric Crohn's disease. Breton J, Tu V, Tanes C, et al. Escherichia coli PubMed ↗
Observational Nature communications · 2024 Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn's disease. Akiyama S, Nishijima S, Kojima Y, et al. Enterococcus faeciumEscherichia coli PubMed ↗
Review European journal of gastroenterology & hepatology · 2024 The role of the fecal microbiota in inflammatory bowel disease. Khalaf R, Sciberras M, Ellul P Escherichia coli PubMed ↗
Observational International journal of molecular sciences · 2024 Integrated Analysis of Microbiome and Metabolome Reveals Disease-Specific Profiles in Inflammatory Bowel Diseases and Intestinal Behçet's Disease. Park Y, Ahn JB, Kim DH, et al. Bacteroides fragilis PubMed ↗