Named species · GMrepo v3 · NCBI lineage

Microbes

Understood as Bacteroidota Edit them in the filters below, or rephrase.

273 species

Most studiedMost common in healthy guts

Species	Healthy guts	Samples ↓
Bacteroides uniformis Bacteroidota · Bacteroidaceae	87%	20,417
Phocaeicola vulgatus Bacteroidota · Bacteroidaceae	82%	19,640
Parabacteroides distasonis Bacteroidota · Tannerellaceae	80%	18,684
Bacteroides ovatus Bacteroidota · Bacteroidaceae	76%	17,825
Bacteroides thetaiotaomicron Bacteroidota · Bacteroidaceae	69%	16,618
Alistipes putredinis Bacteroidota · Rikenellaceae	70%	15,443
Alistipes onderdonkii Bacteroidota · Rikenellaceae	63%	14,224
Parabacteroides merdae Bacteroidota · Tannerellaceae	62%	14,115
Odoribacter splanchnicus Bacteroidota · Odoribacteraceae	66%	14,098
Bacteroides caccae Bacteroidota · Bacteroidaceae	62%	14,078
Bacteroides xylanisolvens Bacteroidota · Bacteroidaceae	59%	13,732
Alistipes shahii Bacteroidota · Rikenellaceae	63%	13,514
Phocaeicola dorei Bacteroidota · Bacteroidaceae	54%	12,489
Bacteroides stercoris Bacteroidota · Bacteroidaceae	50%	12,071
Bacteroides fragilis Bacteroidota · Bacteroidaceae	44%	11,390
Alistipes finegoldii Bacteroidota · Rikenellaceae	51%	10,646
Barnesiella intestinihominis Bacteroidota · Barnesiellaceae	49%	10,270
Alistipes communis Bacteroidota · Rikenellaceae	51%	10,222
Segatella copri Bacteroidota · Prevotellaceae	39%	8,908
Bacteroides cellulosilyticus Bacteroidota · Bacteroidaceae	35%	8,805
Phocaeicola massiliensis Bacteroidota · Bacteroidaceae	34%	7,748
Alistipes indistinctus Bacteroidota · Rikenellaceae	33%	7,331
Alistipes ihumii Bacteroidota · Rikenellaceae	36%	7,246
Bacteroides finegoldii Bacteroidota · Bacteroidaceae	27%	6,205
Phocaeicola plebeius Bacteroidota · Bacteroidaceae	25%	6,067
Paraprevotella clara Bacteroidota · Prevotellaceae	27%	5,834
Bacteroides eggerthii Bacteroidota · Bacteroidaceae	24%	5,593
Butyricimonas virosa Bacteroidota · Odoribacteraceae	23%	5,555
Bacteroides nordii Bacteroidota · Bacteroidaceae	21%	5,434
Bacteroides intestinalis Bacteroidota · Bacteroidaceae	21%	5,257
Alistipes senegalensis Bacteroidota · Rikenellaceae	25%	4,924
Phocaeicola coprocola Bacteroidota · Bacteroidaceae	19%	4,676
Parabacteroides goldsteinii Bacteroidota · Tannerellaceae	18%	4,504
Bacteroides salyersiae Bacteroidota · Bacteroidaceae	18%	4,433
Coprobacter fastidiosus Bacteroidota · Barnesiellaceae	21%	4,432
Butyricimonas faecihominis Bacteroidota · Odoribacteraceae	20%	4,196
Butyricimonas paravirosa Bacteroidota · Odoribacteraceae	17%	3,739
Bacteroides faecis Bacteroidota · Bacteroidaceae	17%	3,706
Bacteroides clarus Bacteroidota · Bacteroidaceae	15%	3,529
Alistipes dispar Bacteroidota · Rikenellaceae	16%	3,184
Leyella stercorea Bacteroidota · Prevotellaceae	13%	3,175
Coprobacter secundus Bacteroidota · Barnesiellaceae	13%	2,733
Parabacteroides johnsonii Bacteroidota · Tannerellaceae	10%	2,353
Butyricimonas faecalis Bacteroidota · Odoribacteraceae	7.6%	1,475
Phocaeicola coprophilus Bacteroidota · Bacteroidaceae	6.0%	1,462
Segatella hominis Bacteroidota · Prevotellaceae	6.4%	1,423
Butyricimonas synergistica Bacteroidota · Odoribacteraceae	5.0%	1,366
Phocaeicola sartorii Bacteroidota · Bacteroidaceae	4.5%	1,335
Prevotella marseillensis Bacteroidota · Prevotellaceae	6.0%	1,184
Sanguibacteroides justesenii Bacteroidota · Porphyromonadaceae	5.4%	1,068
Prevotella corporis Bacteroidota · Prevotellaceae	4.5%	1,044
Prevotella bivia Bacteroidota · Prevotellaceae	3.4%	923
Alistipes timonensis Bacteroidota · Rikenellaceae	4.4%	922
Parabacteroides gordonii Bacteroidota · Tannerellaceae	3.0%	917
Prevotellamassilia timonensis Bacteroidota · Prevotellaceae	4.1%	829
Jilunia laotingensis Bacteroidota · Bacteroidaceae	3.4%	802
Bacteroides bouchesdurhonensis Bacteroidota · Bacteroidaceae	3.3%	800
Alistipes provencensis Bacteroidota · Rikenellaceae	3.1%	793
Prevotella dentalis Bacteroidota · Prevotellaceae	3.5%	764
Hoylesella timonensis Bacteroidota · Prevotellaceae	2.8%	754
Parabacteroides faecis Bacteroidota · Tannerellaceae	2.1%	745
Odoribacter laneus Bacteroidota · Odoribacteraceae	3.6%	659
Hoylesella buccalis Bacteroidota · Prevotellaceae	2.3%	645
Paraprevotella xylaniphila Bacteroidota · Prevotellaceae	3.0%	625
Parabacteroides faecalis Bacteroidota · Tannerellaceae	3.3%	604
Prevotella disiens Bacteroidota · Prevotellaceae	2.3%	598
Bacteroides congonensis Bacteroidota · Bacteroidaceae	2.3%	560
Prevotella merdae Bacteroidota · Prevotellaceae	2.7%	560
Leyella lascolaii Bacteroidota · Prevotellaceae	2.7%	543
Prevotella pectinovora Bacteroidota · Prevotellaceae	2.3%	519
Parabacteroides hominis Bacteroidota · Tannerellaceae	2.0%	499
Segatella buccae Bacteroidota · Prevotellaceae	1.1%	449
Porphyromonas uenonis Bacteroidota · Porphyromonadaceae	1.2%	411
Bacteroides cutis Bacteroidota · Bacteroidaceae	1.6%	374
Alistipes montrealensis Bacteroidota · Rikenellaceae	1.4%	365
Parabacteroides massiliensis Bacteroidota · Tannerellaceae	1.8%	365
Porphyromonas somerae Bacteroidota · Porphyromonadaceae	1.0%	363
Marseilla massiliensis Bacteroidota · Prevotellaceae	1.3%	343
Porphyromonas bennonis Bacteroidota · Porphyromonadaceae	1.0%	315
Bacteroides faecalis Bacteroidota · Bacteroidaceae	1.1%	301
Gallalistipes aquisgranensis Bacteroidota · Rikenellaceae	1.6%	297
Porphyromonas asaccharolytica Bacteroidota · Porphyromonadaceae	<1%	290
Parabacteroides acidifaciens Bacteroidota · Tannerellaceae	<1%	258
Bacteroides fluxus Bacteroidota · Bacteroidaceae	<1%	256
Bacteroides mediterraneensis Bacteroidota · Bacteroidaceae	<1%	253
Phocaeicola faecalis Bacteroidota · Bacteroidaceae	<1%	252
Phocaeicola faecicola Bacteroidota · Bacteroidaceae	1.0%	243
Bacteroides propionicigenes Bacteroidota · Bacteroidaceae	<1%	241
Bacteroides stercorirosoris Bacteroidota · Bacteroidaceae	<1%	230
Prevotella intermedia Bacteroidota · Prevotellaceae	<1%	222
Culturomica massiliensis Bacteroidota · Odoribacteraceae	<1%	221
Parabacteroides bouchesdurhonensis Bacteroidota · Tannerellaceae	<1%	215
Hallella colorans Bacteroidota · Prevotellaceae	<1%	200
Muribaculum gordoncarteri Bacteroidota · Muribaculaceae	<1%	197
Bacteroides togonis Bacteroidota · Bacteroidaceae	<1%	193
Bacteroides oleiciplenus Bacteroidota · Bacteroidaceae	<1%	172
Parabacteroides chinchillae Bacteroidota · Tannerellaceae	<1%	162
Imtechella halotolerans Bacteroidota · Flavobacteriaceae	0%	160
Parabacteroides absconsus Bacteroidota · Tannerellaceae	<1%	147
Hallella bergensis Bacteroidota · Prevotellaceae	<1%	127
Alloprevotella tannerae Bacteroidota · Prevotellaceae	<1%	125
Bacteroides ndongoniae Bacteroidota · Bacteroidaceae	<1%	125
Prevotella melaninogenica Bacteroidota · Prevotellaceae	<1%	124
Hallella faecis Bacteroidota · Prevotellaceae	<1%	110
Prevotella histicola Bacteroidota · Prevotellaceae	<1%	109
Phocaeicola barnesiae Bacteroidota · Bacteroidaceae	<1%	107
Porphyromonas endodontalis Bacteroidota · Porphyromonadaceae	<1%	103
Segatella oris Bacteroidota · Prevotellaceae	<1%	103
Bacteroides gallinarum Bacteroidota · Bacteroidaceae	<1%	102
Dysgonomonas mossii Bacteroidota · Dysgonomonadaceae	<1%	98
Dysgonomonas capnocytophagoides Bacteroidota · Dysgonomonadaceae	<1%	95
Prevotella nigrescens Bacteroidota · Prevotellaceae	<1%	95
Bacteroides acidifaciens Bacteroidota · Bacteroidaceae	<1%	86
Mediterranea massiliensis Bacteroidota · Bacteroidaceae	<1%	73
Coprobacter tertius Bacteroidota · Barnesiellaceae	<1%	71
Elizabethkingia bruuniana Bacteroidota · Weeksellaceae	<1%	69
Prevotella denticola Bacteroidota · Prevotellaceae	<1%	64
Alistipes megaguti Bacteroidota · Rikenellaceae	<1%	62
Dysgonomonas gadei Bacteroidota · Dysgonomonadaceae	<1%	62
Bacteroides gallinaceum Bacteroidota · Bacteroidaceae	<1%	58
Prevotella ihumii Bacteroidota · Prevotellaceae	<1%	58
Hoylesella oralis Bacteroidota · Prevotellaceae	<1%	57
Bacteroides caecigallinarum Bacteroidota · Bacteroidaceae	<1%	56
Bacteroides rodentium Bacteroidota · Bacteroidaceae	<1%	52
Rikenella microfusus Bacteroidota · Rikenellaceae	<1%	52
Porphyromonas gingivalis Bacteroidota · Porphyromonadaceae	<1%	49
Bacteroides faecium Bacteroidota · Bacteroidaceae	<1%	44
Segatella salivae Bacteroidota · Prevotellaceae	<1%	43
Prevotella brunnea Bacteroidota · Prevotellaceae	<1%	41
Bacteroides ilei Bacteroidota · Bacteroidaceae	<1%	39
Porphyromonas bobii Bacteroidota · Porphyromonadaceae	<1%	35
Prevotella jejuni Bacteroidota · Prevotellaceae	<1%	34
Phocaeicola abscessus Bacteroidota · Bacteroidaceae	<1%	33
Hoylesella nanceiensis Bacteroidota · Prevotellaceae	<1%	27
Prevotella amnii Bacteroidota · Prevotellaceae	<1%	25
Sodaliphilus pleomorphus Bacteroidota · Muribaculaceae	<1%	25
Prevotella veroralis Bacteroidota · Prevotellaceae	<1%	24
Prevotella pallens Bacteroidota · Prevotellaceae	<1%	22
Xylanibacter brevis Bacteroidota · Prevotellaceae	<1%	22
Segatella oulorum Bacteroidota · Prevotellaceae	<1%	20
Bacteroides heparinolyticus Bacteroidota · Prevotellaceae	<1%	19
Muribaculum intestinale Bacteroidota · Muribaculaceae	<1%	19
Hallella seregens Bacteroidota · Prevotellaceae	<1%	18
Bacteroides caecicola Bacteroidota · Bacteroidaceae	<1%	17
Hallella multisaccharivorax Bacteroidota · Prevotellaceae	<1%	17
Prevotella multiformis Bacteroidota · Prevotellaceae	<1%	17
Prevotella vespertina Bacteroidota · Prevotellaceae	<1%	17
Barnesiella viscericola Bacteroidota · Barnesiellaceae	<1%	16
Phocaeicola salanitronis Bacteroidota · Bacteroidaceae	<1%	15
Segatella baroniae Bacteroidota · Prevotellaceae	0%	14
Phocaeicola oris Bacteroidota · Bacteroidaceae	0%	13
Prevotella koreensis Bacteroidota · Prevotellaceae	<1%	13
Hallella absiana Bacteroidota · Prevotellaceae	<1%	12
Tannerella serpentiformis Bacteroidota · Tannerellaceae	0%	12
Bacteroides graminisolvens Bacteroidota · Bacteroidaceae	<1%	11
Bacteroides pyogenes Bacteroidota · Bacteroidaceae	<1%	11
Parabacteroides pacaensis Bacteroidota · Tannerellaceae	<1%	11
Bacteroidetes oral taxon 274 Bacteroidota	<1%	10
Cloacibacterium caeni Bacteroidota · Weeksellaceae	<1%	10
Millionella massiliensis Bacteroidota · Rikenellaceae	<1%	10
Tannerella forsythia Bacteroidota · Tannerellaceae	<1%	10
Bacteroides muris (ex Fokt et al. 2023) Bacteroidota · Bacteroidaceae	<1%	9
Chryseobacterium gambrini Bacteroidota · Weeksellaceae	<1%	9
Chryseobacterium koreense Bacteroidota · Weeksellaceae	<1%	9
Empedobacter falsenii Bacteroidota · Weeksellaceae	<1%	9
Phaeodactylibacter xiamenensis Bacteroidota · Haliscomenobacteraceae	0%	9
Sphingobacterium mizutaii Bacteroidota · Sphingobacteriaceae	<1%	9
Bacteroides neonati Bacteroidota · Bacteroidaceae	<1%	8
Capnocytophaga leadbetteri Bacteroidota · Flavobacteriaceae	<1%	8
Hallella mizrahii Bacteroidota · Prevotellaceae	<1%	8
Sphingobacterium cellulitidis Bacteroidota · Sphingobacteriaceae	<1%	8
Duncaniella dubosii Bacteroidota · Muribaculaceae	<1%	7
Duncaniella muris Bacteroidota · Muribaculaceae	<1%	7
Gelidibacter japonicus Bacteroidota · Flavobacteriaceae	<1%	7
Hoylesella marshii Bacteroidota · Prevotellaceae	<1%	7
Paramuribaculum intestinale Bacteroidota · Muribaculaceae	<1%	7
Xylanibacter rodentium Bacteroidota · Prevotellaceae	<1%	7
Alistipes muris Bacteroidota · Rikenellaceae	<1%	6
Capnocytophaga gingivalis Bacteroidota · Flavobacteriaceae	<1%	6
Flavobacterium tegetincola Bacteroidota · Flavobacteriaceae	0%	6
Chryseobacterium lacus Bacteroidota · Weeksellaceae	<1%	5
Epilithonimonas hominis Bacteroidota · Weeksellaceae	<1%	5
Hoylesella loescheii Bacteroidota · Prevotellaceae	0%	5
Macellibacteroides fermentans Bacteroidota · Porphyromonadaceae	<1%	5
Palleniella intestinalis Bacteroidota · Prevotellaceae	<1%	5
Prevotella fusca Bacteroidota · Prevotellaceae	0%	5
Riemerella columbina Bacteroidota · Weeksellaceae	<1%	5
Bacteroides zoogleoformans Bacteroidota · Bacteroidaceae	0%	4
Capnocytophaga sputigena Bacteroidota · Flavobacteriaceae	<1%	4
Chryseobacterium indologenes Bacteroidota · Weeksellaceae	<1%	4
Epilithonimonas bovis Bacteroidota · Weeksellaceae	0%	4
Gelidibacter maritimus Bacteroidota · Flavobacteriaceae	<1%	4
Gelidibacter pelagius Bacteroidota · Flavobacteriaceae	<1%	4
Pedobacter nutrimenti Bacteroidota · Sphingobacteriaceae	0%	4
Xylanibacter caecicola Bacteroidota · Prevotellaceae	<1%	4
Bacteroides caecimuris Bacteroidota · Bacteroidaceae	<1%	3
Capnocytophaga bilenii Bacteroidota · Flavobacteriaceae	<1%	3
Capnocytophaga ochracea Bacteroidota · Flavobacteriaceae	<1%	3
Chryseobacterium suipulveris Bacteroidota · Weeksellaceae	0%	3
Cruoricaptor ignavus Bacteroidota · Weeksellaceae	<1%	3
Duncaniella freteri Bacteroidota · Muribaculaceae	<1%	3
Empedobacter brevis Bacteroidota · Weeksellaceae	<1%	3
Hoylesella saccharolytica Bacteroidota · Prevotellaceae	0%	3
Myroides odoratimimus Bacteroidota · Flavobacteriaceae	<1%	3
Prevotella conceptionensis Bacteroidota · Prevotellaceae	0%	3
Segatella maculosa Bacteroidota · Prevotellaceae	0%	3
Sphingobacterium multivorum Bacteroidota · Sphingobacteriaceae	<1%	3
Bacteroides timonensis Bacteroidota · Bacteroidaceae	0%	2
Capnocytophaga granulosa Bacteroidota · Flavobacteriaceae	0%	2
Chryseobacterium arthrosphaerae Bacteroidota · Weeksellaceae	<1%	2
Chryseobacterium scophthalmum Bacteroidota · Weeksellaceae	<1%	2
Elizabethkingia meningoseptica Bacteroidota · Weeksellaceae	0%	2
Gelidibacter gilvus Bacteroidota · Flavobacteriaceae	<1%	2
Heminiphilus faecis Bacteroidota · Muribaculaceae	<1%	2
Hoylesella enoeca Bacteroidota · Prevotellaceae	0%	2
Hoylesella pleuritidis Bacteroidota · Prevotellaceae	0%	2
Kaistella faecalis Bacteroidota · Weeksellaceae	<1%	2
Kaistella pullorum Bacteroidota · Weeksellaceae	<1%	2
Mesonia hippocampi Bacteroidota · Flavobacteriaceae	0%	2
Myroides guanonis Bacteroidota · Flavobacteriaceae	<1%	2
Prevotella aurantiaca Bacteroidota · Prevotellaceae	<1%	2
Prevotella scopos Bacteroidota · Prevotellaceae	<1%	2
Salegentibacter echinorum Bacteroidota · Flavobacteriaceae	<1%	2
Segatella cerevisiae Bacteroidota · Prevotellaceae	<1%	2
Sphingobacterium daejeonense Bacteroidota · Sphingobacteriaceae	0%	2
Sphingobacterium humi Bacteroidota · Sphingobacteriaceae	<1%	2
Taibaiella chishuiensis Bacteroidota · Chitinophagaceae	0%	2
Aequorivita sinensis Bacteroidota · Flavobacteriaceae	<1%	1
Aequorivita viscosa Bacteroidota · Flavobacteriaceae	<1%	1
Algoriella xinjiangensis Bacteroidota · Weeksellaceae	0%	1
Bacteroides coprosuis Bacteroidota · Bacteroidaceae	0%	1
Bacteroides reticulotermitis Bacteroidota · Bacteroidaceae	0%	1
Candidatus Kaistella beijingensis Bacteroidota · Weeksellaceae	<1%	1
Chryseobacterium aquaticum Bacteroidota · Weeksellaceae	0%	1
Chryseobacterium bernardetii Bacteroidota · Weeksellaceae	<1%	1
Chryseobacterium culicis Bacteroidota · Weeksellaceae	<1%	1
Chryseobacterium daecheongense Bacteroidota · Weeksellaceae	0%	1
Chryseobacterium nepalense Bacteroidota · Weeksellaceae	0%	1
Chryseobacterium taklimakanense Bacteroidota · Weeksellaceae	0%	1
Elizabethkingia anophelis Bacteroidota · Weeksellaceae	0%	1
Elizabethkingia argenteiflava Bacteroidota · Weeksellaceae	<1%	1
Flavobacterium lindanitolerans Bacteroidota · Flavobacteriaceae	0%	1
Flavobacterium notoginsengisoli Bacteroidota · Flavobacteriaceae	0%	1
Kaistella carnis Bacteroidota · Weeksellaceae	0%	1
Myroides indicus Bacteroidota · Flavobacteriaceae	<1%	1
Parapedobacter composti Bacteroidota · Sphingobacteriaceae	0%	1
Pedobacter changchengzhani Bacteroidota · Sphingobacteriaceae	0%	1
Pedobacter quisquiliarum Bacteroidota · Sphingobacteriaceae	0%	1
Petrimonas mucosa Bacteroidota · Dysgonomonadaceae	<1%	1
Porphyromonas catoniae Bacteroidota · Porphyromonadaceae	0%	1
Prevotella lacticifex Bacteroidota · Prevotellaceae	0%	1
Prevotella micans Bacteroidota · Prevotellaceae	0%	1
Proteiniphilum saccharofermentans Bacteroidota · Dysgonomonadaceae	<1%	1
Siphonobacter aquaeclarae Bacteroidota · Cytophagaceae	0%	1
Soonwooa buanensis Bacteroidota · Weeksellaceae	0%	1
Sphingobacterium alimentarium Bacteroidota · Sphingobacteriaceae	0%	1
Sphingobacterium faecale Bacteroidota · Sphingobacteriaceae	<1%	1
Sphingobacterium faecium Bacteroidota · Sphingobacteriaceae	0%	1
Sphingobacterium nematocida Bacteroidota · Sphingobacteriaceae	<1%	1
Sphingobacterium siyangense Bacteroidota · Sphingobacteriaceae	0%	1
Sphingobacterium spiritivorum Bacteroidota · Sphingobacteriaceae	0%	1
Spirosoma terrae Bacteroidota · Cytophagaceae	<1%	1
Xiashengella succiniciproducens Bacteroidota · Marinilabiliaceae	<1%	1
Xylanibacter muris Bacteroidota · Prevotellaceae	0%	1
Bergeyella cardium Bacteroidota · Weeksellaceae	0%	0
Capnocytophaga genosp. AHN8471 Bacteroidota · Flavobacteriaceae	0%	0
Dysgonomonas hofstadii Bacteroidota · Dysgonomonadaceae	0%	0
Flavobacterium ammonificans Bacteroidota · Flavobacteriaceae	0%	0
Hoylesella shahii Bacteroidota · Prevotellaceae	0%	0
Hydrotalea flava Bacteroidota · Chitinophagaceae	0%	0
Ihuprevotella massiliensis Bacteroidota · Prevotellaceae	0%	0
Rudanella lutea Bacteroidota · Cytophagaceae	0%	0
Schleiferia thermophila Bacteroidota · Schleiferiaceae	0%	0

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