1. 
   Microbe Bacillota

   Hominifimenecus microfluidus MeaningAbout Microbotryomycetes
   16% of healthy people
2. 
   Microbe Actinomycetota

   Microbacterium MeaningAbout Microbotryomycetes
   under 1% of healthy people
3. 
   Microbe Actinomycetota

   Streptomyces MeaningAbout Microbotryomycetes
   under 1% of healthy people
4. 
   Microbe Basidiomycota

   Phenoliferia psychrophila KeywordIts page mentions Microbotryomycetes
5. 
   Microbe Actinomycetota

   Actinomyces gerencseriae MeaningAbout Microbotryomycetes
   1.5% of healthy people
6. 
   Microbe Actinomycetota

   Microcella MeaningAbout Microbotryomycetes
7. Research PLoS neglected tropical diseases · 2024 Animal study

   Comparative analysis of the microbiota of sand fly vectors of Leishmania major and L. tropica in a mixed focus of cutaneous leishmaniasis in southeast Tunisia; ecotype shapes the bacterial community structure.

   Enterococcus faecalis

   MeaningAbout Microbotryomycetes
   PubMed ↗
8. Research BMC microbiology · 2023

   Bacterial community analysis identifies Klebsiella pneumoniae as a native symbiotic bacterium in the newborn Protobothrops mucrosquamatus.

   Klebsiella pneumoniae

   MeaningAbout Microbotryomycetes
   PubMed ↗
9. 
   Microbe Actinomycetota

   Actinoplanes MeaningAbout Microbotryomycetes
10. 
    Microbe Bacteroidota

    Microbacter MeaningAbout Microbotryomycetes
11. Research Scientific reports · 2024 Animal study

    Optimization of lung tissue pre-treatment by bead homogenization for subsequent culturomics.

    Escherichia coli

    MeaningAbout Microbotryomycetes
    PubMed ↗
12. Research Cellular and molecular gastroenterology and hepatology · 2018

    A High-Throughput Organoid Microinjection Platform to Study Gastrointestinal Microbiota and Luminal Physiology.

    Escherichia coliBifidobacterium adolescentis

    MeaningAbout Microbotryomycetes
    PubMed ↗
13. 
    Microbe Cyanobacteriota

    Microcoleus MeaningAbout Microbotryomycetes
14. Research eLife · 2024

    Novel class IIb microcins show activity against Gram-negative ESKAPE and plant pathogens.

    Klebsiella pneumoniae

    MeaningAbout Microbotryomycetes
    PubMed ↗
15. 
    Microbe Ascomycota

    Nakaseomyces MeaningAbout Microbotryomycetes
    under 1% of healthy people
16. 
    Microbe Actinomycetota

    Streptomyces diacarni MeaningAbout Microbotryomycetes
    under 1% of healthy people
17. 
    Microbe Actinomycetota

    Micrococcus MeaningAbout Microbotryomycetes
    under 1% of healthy people
18. Research Nature communications · 2024

    Insights into the assembly of the neovaginal microbiota in Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome patients.

    Enterococcus faecalis

    MeaningAbout Microbotryomycetes
    PubMed ↗
19. Research International journal of surgery · 2025 Observational

    Microbial variations in the multibody sites of the pancreatic ductal adenocarcinoma patients.

    Faecalibacterium prausnitziiAkkermansia muciniphila

    MeaningAbout Microbotryomycetes
    PubMed ↗
20. 
    Microbe Actinomycetota

    Microbacteriaceae MeaningAbout Microbotryomycetes
21. Research PloS one · 2017

    Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.

    Streptococcus thermophilusLactococcus lactis

    MeaningAbout Microbotryomycetes
    PubMed ↗
22. 
    Microbe Actinomycetota

    Microbacterium sp. 5K110 Unnamed strain MeaningAbout Microbotryomycetes
    under 1% of healthy people
23. 
    Microbe Actinomycetota

    Glutamicibacter protophormiae MeaningAbout Microbotryomycetes
    under 1% of healthy people
24. Research International journal of molecular sciences · 2022

    Microbiota-Derived Extracellular Vesicles Detected in Human Blood from Healthy Donors.

    Escherichia coli

    MeaningAbout Microbotryomycetes
    PubMed ↗
25. Research Systematic and applied microbiology · 2025

    Unveiling the hidden microbiome: a microbiological exploration of untouched burial crypts in Krakow, Poland.

    Bacteroides fragilis

    MeaningAbout Microbotryomycetes
    PubMed ↗
26. 
    Microbe Actinomycetota

    Microbacterium sp. 4NA327F11 Unnamed strain MeaningAbout Microbotryomycetes
27. 
    Microbe Pseudomonadota

    Micropepsis MeaningAbout Microbotryomycetes
28. Research Insects · 2024

    Microbial Community Structure and Metabolic Function in the Venom Glands of the Predatory Stink Bug, Picromerus lewisi (Hemiptera: Pentatomidae).

    Lactococcus lactis

    MeaningAbout Microbotryomycetes
    PubMed ↗
29. Research Frontiers in cellular and infection microbiology · 2025

    Microbiological colonization of the pancreatic tumor affects postoperative complications and outcome after pancreatic surgery.

    Enterococcus faeciumEnterococcus faecalis

    MeaningAbout Microbotryomycetes
    PubMed ↗
30. Research Journal of B.U.ON. · 2021

    Characteristics of pathogenic microbes in lung microenvironment of lung cancer patients without respiratory infection.

    Haemophilus parainfluenzae

    MeaningAbout Microbotryomycetes
    PubMed ↗
31. Research Current opinion in biotechnology · 2025 Review

    Strategies for engineering domesticated and undomesticated human microbes.

    Escherichia coli

    MeaningAbout Microbotryomycetes
    PubMed ↗
32. 
    Microbe Actinomycetota

    Micromonospora MeaningAbout Microbotryomycetes
33. Research Probiotics and antimicrobial proteins · 2023

    Isolation and Characteristics of Extracellular Vesicles Produced by Probiotics: Yeast Saccharomyces boulardii CNCM I-745 and Bacterium Streptococcus salivarius K12.

    Streptococcus salivarius

    MeaningAbout Microbotryomycetes
    PubMed ↗
34. 
    Microbe Pseudomonadota

    Micropepsaceae MeaningAbout Microbotryomycetes
35. 
    Microbe Actinomycetota

    Streptomyces hiroshimensis MeaningAbout Microbotryomycetes
    under 1% of healthy people
36. 
    Microbe Actinomycetota

    Microbacterium lacticum MeaningAbout Microbotryomycetes
    under 1% of healthy people
37. 
    Microbe Pseudomonadota

    Microvirga MeaningAbout Microbotryomycetes
38. 
    Microbe Actinomycetota

    Agromyces MeaningAbout Microbotryomycetes
39. Research Gut microbes · 2021

    Isolation of pancreatic microbiota from cystic precursors of pancreatic cancer with intracellular growth and DNA damaging properties.

    Klebsiella pneumoniaeEnterococcus faecalis

    MeaningAbout Microbotryomycetes
    PubMed ↗
40. 
    Microbe Actinomycetota

    Micrococcus luteus MeaningAbout Microbotryomycetes
    under 1% of healthy people

Research: PubMed, U.S. National Library of Medicine · citations link to PubMed