1. 
   Microbe Elusimicrobiota

   Endomicrobium NameName close to Endomicrobiaceae
2. 
   Microbe Pseudomonadota

   Hyphomicrobiaceae NameName close to Endomicrobiaceae
3. 
   Microbe Gemmatimonadota

   Longimicrobiaceae NameName close to Endomicrobiaceae
4. 
   Microbe Bacteroidota

   Lentimicrobiaceae NameName close to Endomicrobiaceae
5. Research Frontiers in microbiology · 2024

   Gut microbiota and risk of endocarditis: a bidirectional Mendelian randomization study.

   Faecalicatena fissicatena

   MeaningAbout Endomicrobiaceae
   PubMed ↗
6. 
   Microbe Bacillota

   Planomicrobium MeaningAbout Endomicrobiaceae
7. 
   Microbe Verrucomicrobiota

   Verrucomicrobium MeaningAbout Endomicrobiaceae
8. 
   Microbe Bacillota

   Planomicrobium okeanokoites MeaningAbout Endomicrobiaceae
9. Research Frontiers in veterinary science · 2022

   Assessment of the Endophytic Fungal Composition of Lactobacillus plantarum and Enterococcus faecalis-Fermented Astragalus membranaceus Using Single-Molecule, Real-Time Sequencing Technology.

   Enterococcus faecalisEnterococcus faecium

   MeaningAbout Endomicrobiaceae
   PubMed ↗
10. Research BJOG · 2019 Systematic review

    Endometriosis and the microbiome: a systematic review.

    Escherichia coli

    MeaningAbout Endomicrobiaceae
    PubMed ↗
11. 
    Microbe Actinomycetota

    Aurantimicrobium MeaningAbout Endomicrobiaceae
12. Research International journal of microbiology · 2021

    Discovery of a Novel Lineage Burkholderia cepacia ST 1870 Endophytically Isolated from Medicinal Polygala paniculata Which Shows Potent In Vitro Antileishmanial and Antimicrobial Effects.

    Enterococcus faecalis

    MeaningAbout Endomicrobiaceae
    PubMed ↗
13. 
    Microbe Planctomycetota

    Planctomicrobium MeaningAbout Endomicrobiaceae
14. 
    Microbe Bacillota

    Chryseomicrobium MeaningAbout Endomicrobiaceae
15. 
    Microbe Thermodesulfobacteriota

    Desulfomicrobium MeaningAbout Endomicrobiaceae
16. Research Frontiers in medicine · 2024

    The causality between gut microbiota and endometriosis: a bidirectional Mendelian randomization study.

    Faecalicatena fissicatena

    MeaningAbout Endomicrobiaceae
    PubMed ↗
17. 
    Microbe Synergistota

    Acetomicrobium MeaningAbout Endomicrobiaceae
18. Research Microbiology resource announcements · 2025

    Complete genome sequence of two Hominenteromicrobium mulieris strains CIP 112194 and CIP 112527, isolated from a human fecal sample.

    Hominenteromicrobium mulieris

    MeaningAbout Endomicrobiaceae
    PubMed ↗
19. Research Probiotics and antimicrobial proteins · 2019

    Actinomycin-Producing Endophytic Streptomyces parvulus Associated with Root of Aloe vera and Optimization of Conditions for Antibiotic Production.

    Klebsiella pneumoniae

    MeaningAbout Endomicrobiaceae
    PubMed ↗
20. 
    Microbe Pseudomonadota

    Filomicrobium MeaningAbout Endomicrobiaceae
21. 
    Microbe Armatimonadota

    Fimbriimonadaceae MeaningAbout Endomicrobiaceae
22. Research Archives of Razi Institute · 2021

    Bifidobacteriaceae Family Diversity in Gut Microbiota of Patients with Renal Failure.

    Bifidobacterium longumBifidobacterium adolescentisBifidobacterium animalis

    MeaningAbout Endomicrobiaceae
    PubMed ↗
23. 
    Microbe Bacillota

    Eshraghiella crossota MeaningAbout Endomicrobiaceae
    6.1% of healthy people
24. Research Avicenna journal of medical biotechnology · 2024

    The Phenotypic and Molecular Identification of Phyllospheric Bacteria Possessing Antimicrobial Activity from Funtumia elastica (Preuss) Stapf.

    Klebsiella pneumoniae

    MeaningAbout Endomicrobiaceae
    PubMed ↗
25. 
    Microbe Actinomycetota

    Haematomicrobium MeaningAbout Endomicrobiaceae
26. Research Cell reports · 2024

    Bifidobacteriaceae diversity in the human microbiome from a large-scale genome-wide analysis.

    Bifidobacterium animalis

    MeaningAbout Endomicrobiaceae
    PubMed ↗
27. Research Journal of agricultural and food chemistry · 2025

    Antibiotic Resistance Genes and Microbiota in Brassica oleracea var. acephala Cultivated in South Korea: Potential for Resistance Transmission.

    Klebsiella pneumoniae

    MeaningAbout Endomicrobiaceae
    PubMed ↗
28. 
    Microbe Actinomycetota

    Alloscardovia omnicolens MeaningAbout Endomicrobiaceae
    1.6% of healthy people
29. Research bioRxiv · 2026

    A widespread gut bacterial lineage distinguished by redox metabolism and phage defense.

    Eggerthella lenta

    MeaningAbout Endomicrobiaceae
    PubMed ↗
30. 
    Microbe Pseudomonadota

    Pantoea endophytica MeaningAbout Endomicrobiaceae
31. 
    Microbe Actinomycetota

    Beutenbergia MeaningAbout Endomicrobiaceae
32. Research Nature reviews. Microbiology · 2026 Review

    Eggerthella lenta: metabolism, pathogenesis and therapeutic implications.

    Eggerthella lenta

    MeaningAbout Endomicrobiaceae
    PubMed ↗
33. 
    Microbe Actinomycetota

    Rothia endophytica MeaningAbout Endomicrobiaceae
    under 1% of healthy people
34. 
    Microbe Pseudomonadota

    Candidatus Endoecteinascidia MeaningAbout Endomicrobiaceae
35. Research Applied and environmental microbiology · 2022

    Genomic Island-Mediated Horizontal Transfer of the Erythromycin Resistance Gene erm(X) among Bifidobacteria.

    Bifidobacterium longum

    MeaningAbout Endomicrobiaceae
    PubMed ↗
36. Research European journal of obstetrics, gynecology, and reproductive biology · 2025 Systematic review

    Deciphering the relationship between adenomyosis and the microbiota: a systematic review.

    Segatella copri

    MeaningAbout Endomicrobiaceae
    PubMed ↗
37. 
    Microbe Pseudomonadota

    Nevskiaceae MeaningAbout Endomicrobiaceae
38. 
    Microbe Actinomycetota

    Aeromicrobium MeaningAbout Endomicrobiaceae
39. 
    Microbe Verrucomicrobiota

    Terrimicrobium MeaningAbout Endomicrobiaceae
40. Research Microbial biotechnology · 2022

    Baogong decoction treats endometritis in mice by regulating uterine microbiota structure and metabolites.

    Escherichia coli

    MeaningAbout Endomicrobiaceae
    PubMed ↗

Research: PubMed, U.S. National Library of Medicine · citations link to PubMed