Tepidibacteraceae · Research

Animal study Systematic and applied microbiology · 2021

Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov.

Lugli GA, Calvete-Torre I, Alessandri G, et al.

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Systematic and applied microbiology · 2026

Identification and characterization of four novel gut bacterial taxa: Alvibacillus kangbaii gen. nov., sp. nov., Jutongia huiwenae sp. nov., Flintibacter aciditolerans sp. nov., and Dizhoua hominis gen. nov., sp. nov. isolated from human feces.

Zhao AQ, Jiang H, Yan Y, et al.

Anaeromassilibacillus senegalensis

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International journal of systematic and evolutionary microbiology · 2023

Reclassification of Clostridium cocleatum, Clostridium ramosum, Clostridium spiroforme and Clostridium saccharogumia as Thomasclavelia cocleata gen. nov., comb. nov., Thomasclavelia ramosa comb. nov., gen. nov., Thomasclavelia spiroformis comb. nov. and Thomasclavelia saccharogumia comb. nov.

Lawson PA, Saavedra Perez L, Sankaranarayanan K

Thomasclavelia ramosa

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International journal of systematic and evolutionary microbiology · 2017

Merdimonas faecis gen. nov., sp. nov., isolated from human faeces.

Seo B, Yoo JE, Lee YM, et al.

Faecalicatena contorta

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Animal study Scientific reports · 2024

Anaerobic flora, Selenomonas ruminis sp. nov., and the bacteriocinogenic Ligilactobacillus salivarius strain MP3 from crossbred-lactating goats.

Poothong S, Tanasupawat S, Chanpongsang S, et al.

Ligilactobacillus salivarius

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International journal of systematic and evolutionary microbiology · 2019

Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces.

Seo B, Jeon K, Baek I, et al.

Faecalibacillus intestinalis

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International journal of systematic and evolutionary microbiology · 2026

Acidaminobacterium chupaoyuni gen. nov., sp. nov., a novel member of the family Oscillospiraceae isolated from pit clay for strong aroma-type liquor production.

Liu Y, Zhou Q, Li A, et al.

Intestinimonas butyriciproducens

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Antonie van Leeuwenhoek · 2018

Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.

Togo AH, Diop A, Bittar F, et al.

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PeerJ · 2021

Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken.

Wongkuna S, Ghimire S, Chankhamhaengdecha S, et al.

[Ruminococcus] torques

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Animal study International journal of systematic and evolutionary microbiology · 2019

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Duranti S, Lugli GA, Napoli S, et al.

Bifidobacterium bifidum

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Animal study International journal of systematic and evolutionary microbiology · 2020

Characterization of the phylogenetic diversity of two novel species belonging to the genus Bifidobacterium: Bifidobacterium cebidarum sp. nov. and Bifidobacterium leontopitheci sp. nov.

Duranti S, Lugli GA, Viappiani A, et al.

Bifidobacterium bifidum

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BMC microbiology · 2023

Bacterial community analysis identifies Klebsiella pneumoniae as a native symbiotic bacterium in the newborn Protobothrops mucrosquamatus.

Su HY, Hussain B, Hsu BM, et al.

Klebsiella pneumoniae

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Frontiers in microbiology · 2017

New Insights into the Diversity of the Genus Faecalibacterium.

Benevides L, Burman S, Martin R, et al.

Faecalibacterium prausnitzii

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Genome biology · 2020

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations.

Karcher N, Pasolli E, Asnicar F, et al.

Agathobacter rectalis

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Animal study Microbiology spectrum · 2022

Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca.

Kralova S, Davidova-Gerzova L, Valcek A, et al.

Bacteroides fragilis

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PeerJ · 2020

Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces.

Ghimire S, Wongkuna S, Scaria J

[Clostridium] innocuum

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Biochemistry · 2023

Lipidome of the Bacteroides Genus Containing New Peptidolipid and Sphingolipid Families Revealed by Multiple-Stage Mass Spectrometry.

Frankfater CF, Sartorio MG, Valguarnera E, et al.

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Animal study Scientific reports · 2019

Community profiling of the intestinal microbial community of juvenile Hammerhead Sharks (Sphyrna lewini) from the Rewa Delta, Fiji.

Juste-Poinapen NMS, Yang L, Ferreira M, et al.

Klebsiella pneumoniae

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Antonie van Leeuwenhoek · 2018

Correction to: Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.

Togo AH, Diop A, Bittar F, et al.

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International journal of systematic and evolutionary microbiology · 2018

Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces.

Shetty SA, Zuffa S, Bui TPN, et al.

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Scientific reports · 2021

Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces.

Zou Y, Lin X, Xue W, et al.

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Observational International microbiology · 2026

Gut microbial alterations and functional shifts in patients with hypertriglyceridemia: insights from a northwestern Chinese metagenomic study.

Lv J, Wang JH, Wang YY, et al.

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International journal of systematic and evolutionary microbiology · 2022

Pararoseburia lenta gen. nov., sp. nov. isolated from human faeces.

Abdugheni R, Wang YJ, Li DH, et al.

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iScience · 2022

Exploring clade differentiation of the Faecalibacterium prausnitzii complex.

Fabbrini M, Candela M, Turroni S, et al.

Faecalibacterium prausnitzii

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Journal of microbiology · 2024

Description of Streptococcus dentalis sp. nov., Streptococcus gingivalis sp. nov., and Streptococcus lingualis sp. nov., Isolated from Human Oral Cavities.

Goo BJ, Choi YS, Gim DH, et al.

Streptococcus parasanguinis

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Journal of advanced veterinary and animal research · 2025

Bacterial biodiversity and metagenomic study of dadih, traditional fermented buffalo milk from Kampar district, Riau, Indonesia.

Rossi E, Pato U, Ayu DF, et al.

Lactococcus lactis

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Animal study International journal of molecular sciences · 2022

Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint.

Baranova MN, Kudzhaev AM, Mokrushina YA, et al.

Escherichia coli

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International journal of systematic and evolutionary microbiology · 2024

Anaerolentibacter hominis gen. nov. sp. nov., Diplocloster hominis sp. nov. and Pilosibacter fragilis gen. nov. sp. nov., isolated from human faeces.

Yan Y, Zhao QH, Xu C, et al.

Clostridium fessum

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International journal of systematic and evolutionary microbiology · 2021

Blautia intestinalis sp. nov., isolated from human feces.

Wang YJ, Abdugheni R, Liu C, et al.

Blautia obeum

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Frontiers in microbiology · 2021

The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species.

Nøhr-Meldgaard K, Struve C, Ingmer H, et al.

Bifidobacterium animalis

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Observational Microbiology spectrum · 2026

Gut microbial community structure, metabolic signature, and resistome in dyslipidemia: implications for cardiovascular disease management.

Lee S, Kim H-L, Raza S, et al.

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International journal of systematic and evolutionary microbiology · 2019

Parabacteroides acidifaciens sp. nov., isolated from human faeces.

Wang YJ, Xu XJ, Zhou N, et al.

Parabacteroides distasonis

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Antonie van Leeuwenhoek · 2022

Draft genomes and descriptions of Urmitella timonensis gen. nov., sp. nov. and Marasmitruncus massiliensis gen. nov., sp. nov., isolated from severely malnourished African children using culturomics.

Bellali S, Haddad G, Pham TP, et al.

Anaerotruncus colihominis

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New microbes and new infections · 2017

Genome sequence and description of Anaeromassilibacillus senegalensis gen. nov., sp. nov., isolated from the gut of patient with kwashiorkor.

Guilhot E, Alou MT, Lagier JC, et al.

Anaeromassilibacillus senegalensis

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Medicine · 2025

Exploring the causal relationship between gut microbiota and thromboembolism: A Mendelian randomization study.

Wang Z, Zheng Z

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Genome biology · 2020

Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity.

Utter DR, Borisy GG, Eren AM, et al.

Haemophilus parainfluenzae

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Scientific reports · 2016

Microbiome analysis reveals the abundance of bacterial pathogens in Rousettus leschenaultii guano.

Banskar S, Bhute SS, Suryavanshi MV, et al.

Escherichia coli

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Cell reports · 2024

Bifidobacteriaceae diversity in the human microbiome from a large-scale genome-wide analysis.

Pasolli E, Mauriello IE, Avagliano M, et al.

Bifidobacterium animalis

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The ISME journal · 2019

Diversity patterns of bacteriophages infecting Aggregatibacter and Haemophilus species across clades and niches.

Szafrański SP, Kilian M, Yang I, et al.

Haemophilus parainfluenzae

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Journal of oral microbiology · 2025

Spatial and temporal dynamic changes of oral microbiome in removable partial denture wearers: a longitudinal study using full-length 16S rRNA sequencing.

Feng X, Gan X, Ren B, et al.

Klebsiella pneumoniae

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