1. 
   Microbe Spirochaetota

   Borreliella garinii NameIn the family Borreliaceae
   under 1% of healthy people
2. 
   Microbe Spirochaetota

   Borreliella NameIn the family Borreliaceae
   under 1% of healthy people
3. 
   Microbe Bacillota

   Clostridiaceae bacterium Marseille-Q3526 Unnamed strain MeaningAbout Borreliaceae
   13% of healthy people
4. 
   Microbe Bacillota

   Clostridiaceae bacterium Marseille-Q4145 Unnamed strain MeaningAbout Borreliaceae
   24% of healthy people
5. 
   Microbe Bacillota

   Clostridiaceae bacterium AF18-31LB Unnamed strain MeaningAbout Borreliaceae
   55% of healthy people
6. 
   Microbe Bacillota

   Ruminococcaceae bacterium Marseille-P2935 Unnamed strain MeaningAbout Borreliaceae
   under 1% of healthy people
7. 
   Microbe Bacillota

   Clostridiaceae bacterium Marseille-Q4143 Unnamed strain MeaningAbout Borreliaceae
   43% of healthy people
8. 
   Microbe Bacillota

   Clostridiaceae bacterium Marseille-Q4149 Unnamed strain MeaningAbout Borreliaceae
   26% of healthy people
9. 
   Microbe Bacillota

   Roseburia inulinivorans MeaningAbout Borreliaceae
   70% of healthy people
10. 
    Microbe Bacillota

    Bacillaceae MeaningAbout Borreliaceae
11. Research Ticks and tick-borne diseases · 2026 Animal study

    Natural antibodies induced by host gut microbiota modulate tick microbiota, inhibiting Borrelia colonization.

    Escherichia coli

    MeaningAbout Borreliaceae
    PubMed ↗
12. 
    Microbe Pseudomonadota

    Neisseriaceae MeaningAbout Borreliaceae
13. 
    Microbe Bacteroidota

    Rikenellaceae MeaningAbout Borreliaceae
14. Research Acta parasitologica · 2017 Animal study

    PCR denaturing gradient gel electrophoresis as a useful method to identify of intestinal bacteria flora in Haemaphysalis flava ticks.

    Klebsiella pneumoniae

    MeaningAbout Borreliaceae
    PubMed ↗
15. 
    Microbe Bacteroidota

    Tannerellaceae MeaningAbout Borreliaceae
16. Research Scientific reports · 2022

    Increased abundance of Ruminococcus gnavus in gut microbiota is associated with moyamoya disease and non-moyamoya intracranial large artery disease.

    Mediterraneibacter gnavusRoseburia inulinivorans

    MeaningAbout Borreliaceae
    PubMed ↗
17. 
    Microbe Bacteroidota

    Hoylesella buccalis MeaningAbout Borreliaceae
    2.3% of healthy people
18. Research mSphere · 2021 Observational

    Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico.

    Segatella copri

    MeaningAbout Borreliaceae
    PubMed ↗
19. 
    Microbe Actinomycetota

    Sporichthyaceae MeaningAbout Borreliaceae
20. Research Gut pathogens · 2024

    Dietary patterns drive loss of fiber-foraging species in the celiac disease patients gut microbiota compared to first-degree relatives.

    Akkermansia muciniphila[Eubacterium] siraeum

    MeaningAbout Borreliaceae
    PubMed ↗
21. Research PloS one · 2018 Animal study

    Culture-based analysis of Pristionchus-associated microbiota from beetles and figs for studying nematode-bacterial interactions.

    Escherichia coli

    MeaningAbout Borreliaceae
    PubMed ↗
22. 
    Microbe Bacillota

    Clostridiaceae bacterium Unnamed strain MeaningAbout Borreliaceae
    74% of healthy people
23. 
    Microbe Bacteroidota

    Hoylesella pleuritidis MeaningAbout Borreliaceae
24. 
    Microbe Bacillota

    Roseburia sp. AF02-12 Unnamed strain MeaningAbout Borreliaceae
    33% of healthy people
25. Research Microbiology spectrum · 2025 Animal study

    The bacterial diversity and potential pathogenic risks of giant panda-infesting ticks.

    Klebsiella pneumoniae

    MeaningAbout Borreliaceae
    PubMed ↗
26. Research Food research international · 2019

    Leaf-associated microbiota on perilla (Perilla frutescens var. frutescens) cultivated in South Korea to detect the potential risk of food poisoning.

    Klebsiella pneumoniae

    MeaningAbout Borreliaceae
    PubMed ↗
27. 
    Microbe Pseudomonadota

    Raoultella ornithinolytica MeaningAbout Borreliaceae
    3.4% of healthy people
28. 
    Microbe Bacillota

    Veillonellaceae bacterium DNF00626 Unnamed strain MeaningAbout Borreliaceae
    under 1% of healthy people
29. 
    Microbe Bacteroidota

    Porphyromonadaceae bacterium FC4 Unnamed strain MeaningAbout Borreliaceae
    under 1% of healthy people
30. 
    Microbe Pseudomonadota

    Steroidobacteraceae MeaningAbout Borreliaceae
31. 
    Microbe Bacillota

    Roseburia MeaningAbout Borreliaceae
    88% of healthy people
32. Research Food microbiology · 2023

    Weather factors, soil microbiome, and bacteria-fungi interactions as drivers of the epiphytic phyllosphere communities of romaine lettuce.

    Escherichia coli

    MeaningAbout Borreliaceae
    PubMed ↗
33. 
    Microbe Cyanobacteriota

    Oscillatoriaceae MeaningAbout Borreliaceae
34. Research FEMS microbiology ecology · 2025 Animal study

    Antimicrobiota vaccine induces lysine-mediated modulation of tick immunity affecting Borrelia colonization.

    Escherichia coli

    MeaningAbout Borreliaceae
    PubMed ↗
35. Research Microbiome · 2025 Animal study

    Abelmoschus Manihot flowers inhibit dysbiotic Enterobacteriaceae expansion by promoting Clostridium bolteae-mediated hypoxia restoration.

    Enterocloster bolteae

    MeaningAbout Borreliaceae
    PubMed ↗
36. 
    Microbe Bacillota

    Eubacteriaceae bacterium Marseille-Q4139 Unnamed strain MeaningAbout Borreliaceae
    5.0% of healthy people
37. 
    Microbe Bacillota

    Christensenellaceae MeaningAbout Borreliaceae
38. Research Clinical rheumatology · 2025 Observational

    Gut dysbiosis and inflammation in patients with Juvenile Idiopathic Arthritis-Enthesitis Related Arthritis: impact of HLA-B27 status.

    Dorea longicatenaSegatella copriCoprococcus eutactus

    MeaningAbout Borreliaceae
    PubMed ↗
39. 
    Microbe Bacillota

    Lachnoanaerobaculum saburreum MeaningAbout Borreliaceae
    under 1% of healthy people
40. 
    Microbe Actinomycetota

    Dermatophilaceae MeaningAbout Borreliaceae

Research: PubMed, U.S. National Library of Medicine · citations link to PubMed