Nitrobacteraceae · Research

Animal study Microbiology spectrum · 2022

Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca.

Kralova S, Davidova-Gerzova L, Valcek A, et al.

Bacteroides fragilis

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Systematic and applied microbiology · 2026

Identification and characterization of four novel gut bacterial taxa: Alvibacillus kangbaii gen. nov., sp. nov., Jutongia huiwenae sp. nov., Flintibacter aciditolerans sp. nov., and Dizhoua hominis gen. nov., sp. nov. isolated from human feces.

Zhao AQ, Jiang H, Yan Y, et al.

Anaeromassilibacillus senegalensis

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The FEBS journal · 2025

Distribution and activity of nitrate and nitrite reductases in the microbiota of the human intestinal tract.

Hager N, Gindt ME, Hövels M, et al.

Escherichia coli

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Nature communications · 2023

The genomic landscape of reference genomes of cultivated human gut bacteria.

Lin X, Hu T, Chen J, et al.

Collinsella aerofaciens

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International journal of systematic and evolutionary microbiology · 2021

Blautia intestinalis sp. nov., isolated from human feces.

Wang YJ, Abdugheni R, Liu C, et al.

Blautia obeum

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mSphere · 2020

Acinetobacter baumannii NCIMB8209: a Rare Environmental Strain Displaying Extensive Insertion Sequence-Mediated Genome Remodeling Resulting in the Loss of Exposed Cell Structures and Defensive Mechanisms.

Repizo GD, Espariz M, Seravalle JL, et al.

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Animal study Scientific reports · 2019

Comparative analysis of intestinal bacteria among venom secretion and non-secrection snakes.

Qin Z, Wang S, Guo D, et al.

[Clostridium] innocuum

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International journal of systematic and evolutionary microbiology · 2022

Pararoseburia lenta gen. nov., sp. nov. isolated from human faeces.

Abdugheni R, Wang YJ, Li DH, et al.

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Antonie van Leeuwenhoek · 2018

Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.

Togo AH, Diop A, Bittar F, et al.

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The Science of the total environment · 2022

Synergistic effect of bioanode and biocathode on nitrobenzene removal: Microbial community structure and functions.

Hu J, Liu G, Li H, et al.

Klebsiella pneumoniae

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PeerJ · 2020

Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces.

Ghimire S, Wongkuna S, Scaria J

[Clostridium] innocuum

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Animal study Journal of bioscience and bioengineering · 2021

Transition and regulation mechanism of bacterial biota in Kishu saba-narezushi (mackerel narezushi) during its fermentation step.

Doi R, Wu Y, Kawai Y, et al.

Lactococcus lactis

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Animal study Systematic and applied microbiology · 2021

Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov.

Lugli GA, Calvete-Torre I, Alessandri G, et al.

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Microorganisms · 2026

Genome Sequences of Three Enterococcus faecalis Strains (LAB1, LAB10, and LAB11) with Probiotic, Plant Growth-Promoting, and Nitrifying Properties.

Akinyemi MO, Coulibaly WH, Sakia Mian TM, et al.

Enterococcus faecalis

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Animal study International journal of systematic and evolutionary microbiology · 2020

Characterization of the phylogenetic diversity of two novel species belonging to the genus Bifidobacterium: Bifidobacterium cebidarum sp. nov. and Bifidobacterium leontopitheci sp. nov.

Duranti S, Lugli GA, Viappiani A, et al.

Bifidobacterium bifidum

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Cell reports · 2024

Bifidobacteriaceae diversity in the human microbiome from a large-scale genome-wide analysis.

Pasolli E, Mauriello IE, Avagliano M, et al.

Bifidobacterium animalis

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Food & function · 2026

Associations among dietary nitrosamine intake, fecal N-nitroso compounds and intestinal microbiota in adults according to intestinal mucosa damage.

Ruiz-Saavedra S, Pietilä TK, Zapico A, et al.

[Ruminococcus] torques

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Frontiers in microbiology · 2024

Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle.

Yang Z, Chen X, Yu M, et al.

Agathobacter rectalis

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Current microbiology · 2024

A Comparative Metagenomic Analysis of Specified Microorganisms in Groundwater for Non-Sterilized Pharmaceutical Products.

Daddy Gaoh S, Alusta P, Lee YJ, et al.

Escherichia coli

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Animal study Journal of veterinary science · 2024

Isolation and identification of aerobic and anaerobic bacteria from the feces of wild Korean water deer (Hydropotes inermis argyropus).

Islam MA, Kim S, Islam MS, et al.

Enterococcus faecalis

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Scientific reports · 2025

Synergy between culturomics and metagenomics of health status-associated gut bacteria originating from non-IBD and IBD populations.

Plomp N, Gacesa R, Slager J, et al.

Bifidobacterium adolescentis

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International journal of systematic and evolutionary microbiology · 2023

Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces.

Abdugheni R, Li DH, Wang YJ, et al.

Merdimmobilis hominis

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Microbiology spectrum · 2025

Erratum for Maniee et al., "Whole-genome analysis of Ligilactobacillus salivarius L33, a potential probiotic strain isolated from chicken gastrointestinal tract".

Maniee SA, Mahmoodian S, Zamani Amirzakaria J, et al.

Ligilactobacillus salivarius

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Environmental science & technology · 2022

Nitric Oxide: A Neglected Driver for the Conjugative Transfer of Antibiotic Resistance Genes among Wastewater Microbiota.

Huang H, Feng G, Wang M, et al.

Escherichia coli

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Gut microbes reports · 2026

Isolation and characterization of a novel lytic bacteriophage for Faecalibacterium prausnitzii, a key member of the human gut microbiota.

Whitty M, Jelinic M, Drummond GR, et al.

Faecalibacterium prausnitzii

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Systematic and applied microbiology · 2021

Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov.

Zou Y, Xue W, Lin X, et al.

Roseburia intestinalis

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International journal of systematic and evolutionary microbiology · 2019

Parabacteroides acidifaciens sp. nov., isolated from human faeces.

Wang YJ, Xu XJ, Zhou N, et al.

Parabacteroides distasonis

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New microbes and new infections · 2017

Genome sequence and description of Anaeromassilibacillus senegalensis gen. nov., sp. nov., isolated from the gut of patient with kwashiorkor.

Guilhot E, Alou MT, Lagier JC, et al.

Anaeromassilibacillus senegalensis

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Animal study Scientific reports · 2019

Community profiling of the intestinal microbial community of juvenile Hammerhead Sharks (Sphyrna lewini) from the Rewa Delta, Fiji.

Juste-Poinapen NMS, Yang L, Ferreira M, et al.

Klebsiella pneumoniae

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Scientific reports · 2021

Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces.

Zou Y, Lin X, Xue W, et al.

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Observational Free radical biology & medicine · 2018

Salivary nitrite production is elevated in individuals with a higher abundance of oral nitrate-reducing bacteria.

Burleigh MC, Liddle L, Monaghan C, et al.

Veillonella dispar

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Animal study Applied and environmental microbiology · 2022

Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria.

Schöpping M, Vesth T, Jensen K, et al.

Bifidobacterium adolescentis

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Observational Journal of microbiology and biotechnology · 2016

Microbial Community of Healthy Thai Vegetarians and Non-Vegetarians, Their Core Gut Microbiota, and Pathogen Risk.

Ruengsomwong S, La-Ongkham O, Jiang J, et al.

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Antonie van Leeuwenhoek · 2018

Correction to: Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.

Togo AH, Diop A, Bittar F, et al.

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Animal study International journal of systematic and evolutionary microbiology · 2019

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Duranti S, Lugli GA, Napoli S, et al.

Bifidobacterium bifidum

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Journal of research in medical sciences · 2021

Microbial diversity and colonization patterns of two step-down care units from a tertiary care hospital.

Cruz-López F, Villarreal-Treviño L, Morfin-Otero R, et al.

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Review Gut pathogens · 2022

The role of non-Helicobacter pylori bacteria in the pathogenesis of gastroduodenal diseases.

Waskito LA, Rezkitha YAA, Vilaichone RK, et al.

Haemophilus parainfluenzae

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Animal study Frontiers in cellular and infection microbiology · 2026

Metagenomic analysis of fecal and environmental microbiota in rural mixed livestock farming systems in South Africa.

Mthembu TP, Hlongwane NL, Salawu-Rotimi A, et al.

Escherichia coli

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International journal of systematic and evolutionary microbiology · 2019

Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces.

Seo B, Jeon K, Baek I, et al.

Faecalibacillus intestinalis

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International journal of systematic and evolutionary microbiology · 2026

Acidaminobacterium chupaoyuni gen. nov., sp. nov., a novel member of the family Oscillospiraceae isolated from pit clay for strong aroma-type liquor production.

Liu Y, Zhou Q, Li A, et al.

Intestinimonas butyriciproducens

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